Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0589 ATGTCTTGGGGAAAGTTATTTAAGCCTCACACACTCCCCATGGACTTGCACTCTCTCCTATCGGACCAACACCGCCAGCTCGCCGCCGCCGAAGCCATGGAATCGAACCTCGACTTCGCCTTCCGCCTCCAGTTACAGGAAGCCCTCGCGGCCTCCCTCGCCTCCCAGCCCTCCTCTTCCTCCGCCGCAGCTATCGAACAACCCGTCGTCGTCGTCGACGACGACGATGTCAACGCGACGACGCTGCAGCGCCAGGAGCTGGCTCGTCTGGATCGTGAGATGAAGGACCGAGAACACAGCGAGGCGGAGACGCAAAAAATGAGGGAGGAACTCTGCCGTCGGATCCACGACGAGAAGGTGGCGAGGGAGATTTCCGCGATTCCCGAGAAGGACTGGGAGCAGTGGGGCGACAACTTCGAGAAACCGTTCGGAGAGGGCTCGTCCTCTTCGTTGGGGAGTAGAGAGGAGGGCGTTGTTAGGGTTTACTTCAAGGGTTTGGTGAGCGAGGAAAACGTGAGGGGGCAGAATGTCGTGTTGTCTGGGATCGGGGTTGCGATTTGCGACCTAAGCGATAATCTGATATTCGAGGTTTCTAAGTCGCTCGTTGGGAATGACACTAGCAAGGTCGCTGCAGAGATTAAGGCTTTAATTGAGGCTTTCAATGCCGCCATTGCTTTGGACTTGAAGCGCGTCGTTTATTGCTGCGATTATTATCCCCTTTTCCAATTTGTGAGTGGAAAATGGCCTGCAAAACAGTGGAAGATTGCTATGTTGGTTGATCAAGTGGATCTGCTTCAAAGGAAGTTTTCATACTGCAATCCAAGGCTTGTGGCCAGACATAATGTCAAGTTTGCATTTAAGCTTGCAAGAGATGCCATTGAGTCTCAGTCCACGAGGCCTGCGGAATCTGGGAGTAGGAGGAGTTTGAATGAAACTTGTGTCATATGTTTGGAGGAAACTGATGCCAGTCAGATTTTTTCAGTTGATGGCTGTCAACACCGCTATTGCTTCTCGTGCATGAAACAGCATGTGGAGGTGAAGTTACTTCATGGAATGGTGCCAAAGTGCCCTCACGAGGGGTGCAAGTATGAGCTTCTAGTCAACAGCTGCCAGAAGTTCTTGACTCAAAAGTTAACTGAGACCATGCAGCAACGAAAATTGGAAGCTTCAATTCCTGTTGCTGAAAAAATTTATTGCCCTTATCCTAGATGCTCTGCATTAATGTCAAAAACTGAGGTTTTAGAGTACTCGAGAAATATCATCGATCAATCTGAACAATCTGGAGTCAAGAAATGCCTAAAATGTCATGGTCTTTTCTGTTTTAATTGCAAGGTCCCTTGGCATAGTGGTATGACATGTAATACTTACAAAAGGATGAATCCTAATCCTCCTGCAGAAGATTTGAAGCTGAAGTTTCTTGCATCAAGGAGCCTATGGCGACAGTGTCTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGTGGTTACGAATTTTGCTATAATTGTGGAGCCGAGTGGAAGGACAAAAAAGCAACATGTGCTTGCCCTCTTTGGGCCGAGGACAATATTTGGTTAGATGATCACGAGGAAGAGTTGGAAGATGATGATGATGATGATTATAACTCTGATTATTCTGATGGTTATTATTATTAA 1677 0.4776 MSWGKLFKPHTLPMDLHSLLSDQHRQLAAAEAMESNLDFAFRLQLQEALAASLASQPSSSSAAAIEQPVVVVDDDDVNATTLQRQELARLDREMKDREHSEAETQKMREELCRRIHDEKVAREISAIPEKDWEQWGDNFEKPFGEGSSSSLGSREEGVVRVYFKGLVSEENVRGQNVVLSGIGVAICDLSDNLIFEVSKSLVGNDTSKVAAEIKALIEAFNAAIALDLKRVVYCCDYYPLFQFVSGKWPAKQWKIAMLVDQVDLLQRKFSYCNPRLVARHNVKFAFKLARDAIESQSTRPAESGSRRSLNETCVICLEETDASQIFSVDGCQHRYCFSCMKQHVEVKLLHGMVPKCPHEGCKYELLVNSCQKFLTQKLTETMQQRKLEASIPVAEKIYCPYPRCSALMSKTEVLEYSRNIIDQSEQSGVKKCLKCHGLFCFNCKVPWHSGMTCNTYKRMNPNPPAEDLKLKFLASRSLWRQCLKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWKDKKATCACPLWAEDNIWLDDHEEELEDDDDDDYNSDYSDGYYY* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0589 558 SUPERFAMILY Ribonuclease H-like 181 293 IPR012337 -
Gso12g0589 558 Gene3D - 159 301 IPR036397 GO:0003676
Gso12g0589 558 MobiDBLite consensus disorder prediction 539 558 - -
Gso12g0589 558 SMART ibrneu5 380 453 IPR002867 -
Gso12g0589 558 SMART ibrneu5 454 521 IPR002867 -
Gso12g0589 558 SUPERFAMILY RING/U-box 395 458 - -
Gso12g0589 558 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 37 534 - -
Gso12g0589 558 ProSiteProfiles Zinc finger RING-type profile. 313 357 IPR001841 -
Gso12g0589 558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 394 IPR013083 -
Gso12g0589 558 Pfam IBR domain, a half RING-finger domain 382 453 IPR002867 -
Gso12g0589 558 Pfam IBR domain, a half RING-finger domain 472 521 IPR002867 -
Gso12g0589 558 ProSitePatterns Zinc finger RING-type signature. 331 340 IPR017907 -
Gso12g0589 558 SUPERFAMILY RING/U-box 311 392 - -
Gso12g0589 558 ProSiteProfiles TRIAD supradomain profile. 309 533 IPR044066 -
Gso12g0589 558 Pfam Reverse transcriptase-like 175 292 IPR002156 GO:0003676|GO:0004523
Gso12g0589 558 Coils Coil 90 110 - -
Gso12g0589 558 Gene3D - 449 554 - -
Gso12g0589 558 SUPERFAMILY RING/U-box 467 530 - -
Gso12g0589 558 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 37 534 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0589 Gso-Chr12 5304651 5308647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0589 160 512 C3H Transcription Factor Family AT2G19610 33.520 7.30e-64 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0589 - - gmx:100790037 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0589 12 5304651 5308647 Gso11g1252 11 11563051 11567234 GST