Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0584 ATGGATTTGGTACCGAGCGTCAAGGAAAAATTAAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTTGATCGCATATTATCTGTTCTCTCAGATGAACAAGTTTCAAAAATCTGGGCTAAGAAGAATGCTGGTGGTGGAAAAGAACAGGTAGCAAAATTAGTGGATGATACATATAGGAAAATGCAGATATCAGGGGCCACTGATCTAGCTTCTAAGGGACAGGGTGCATCAGATAGCAGTAGTGTAAAGGTTAAAAGTGAATTTGATGATGCCTTTCAACCAGATGTGAAGATTCGCTGTCTATGTGGAAGTAGATTGGAAACAGAGAATTTGGTCAAGTGTGATGATGCAAGATGCCATGTGTGGCAACACATCAGTTGCGTTATTATTCCAGAGAAACCTACTGAAGGCATCCCACTAGTTCCTGATAAATTTTATTGTGAACTCTGTCGTCTCACTCGTGCAGATCCATTTTGGGTTTCAGTGGCGCACCCTTTGCATCCTGTGAAGTTGACCACAACCAGTAATCCAACTGATGGAAACAACCCAGTGCAGAGTGTGGAGAGAACATTTCAACTGACTAGAGCTGACAAGGACTTGGTATCAAAACCAGAATTTGATGTTGAGGCTTGGTGTATGCTCCTGAACGACAAGGTTCCATTCAGGATGCAATGGCCACAGTATACAGACCTGCAGGTCAATGGTGTTCCTGTTCGTGCAACTAACAGACCTGGTTCACAGTTGCTTGGGGCTAATGGTCGGGATGACGGTCCAATTATCACGCCATATACAAAAGATGGAATTAATAAGATTTCCTTAACAGGATGTGATGCTCGCATTTTTTGTTTAGGGGTTCGTATTGTTAAAAGGCGCAGTATGCAGCAGATCCTAAACTCAATCCCAAAGGAGTCTGATGGCGAGAAATTTGAAGACGCCCTTGCACGTGTCTGCCGTTGTGTTGGGGGTGGAAATGCAGTTGATGATGCTGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTCACTGTCAACCTTCGTTGTCCTATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTTAAACCCTGTATTCACATGGGTTGCTTTGATCTTGAAGTGTTTGTGGAAATGAACCAACGATCAAGGAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCGTTGGAGAATATCATCATTGACCCTTATTTCAATCGCATCACTTCTATGATGATGAATTGTGGTGAAGAAATTGCAGAGATTGAGGTGAAGCCTGATGGTTCTTGGCGTGTTAAGGTAAAGAGTGAAAGTGAACGCCTGGAATTAGGGAATCTAGCACAGTGGCGCCTTCCTGATGGAACCCTCTGTGTGTCAACTGCTGGAGATGTCAAGAGAGTGGATACATTGAAGCAGGTTAAACAGGAAGGTGTTTCAGACTGTCCGGCTGGTTTAAAACTTGGCATAAGGAAGAATCGCAATGGAGTTTGGGAAGTCAGTAAACCTGAGGGCACAAACACCTCTTCTGGTAATAAATTGAAAGGGGCTTTTGGAAATCCCGAACAGGTTGTTATTCCAATGAGCAGCAGTGCCACTGGAAGTGGTCGGGATGGTGACGACCCTAGTGTAAATCAGGGTGGTGGTGGGCATATTGACCATTCCACTACAAATGGGATTGAGATGGATTCTTTGTGTCTCAATAATGTTGATTTAGCATATGAATATAATGAACCCAACACTTCTGCTCAGGTGGGTGGTGCAGAAGTTATTGTTCTTAGTGATTCTGAAGAAGACAATGATTTGTTGGTATCTCCTGCAATTGCTTATAAGAACAACAGAAATGATGCTACAGATGGTTACTCTGTACCACCACCTGTAATTGTTGATTCATATACTGAAGAGCATAATCTTGGTGGAAATTCATGCTTAGGACTCTTTCCTAATGATGATGAATTTGGGATGTCTTCCCTGTGGTCATTGCCTTCTGGAAGTCAGGCTGGTCCTGGATTCCAGTTATTTGGTTCTGATGCGGATGTGTCTGATGCGTTGGTCCATCTGCAGCATGGTCCTATGAATTGCTCCTCGTCACTAAATGGTTATGCATTGGCTCCCAATACTGCTTTGGGATCTGGTAGTATCTTGCAAGAGTCCTCTGCTGGTCGGTCAGATGCTGATTTGAATGGTGGTTTGGTGGACAATCCTTTGGCCTTTGGTGGAGATGATCCCTCACTTCAGATTTTTCTCCCCACAAGACCAGCAGATTCATCCATGCACAATGAATTGAGAGATCAAGCAAGTGTGGCTAATGGTGTCTGCACTGAGGAGGATTGGATATCCCTCAGTCTTGGAGGTGGGACTGGTGGTAACAATGGTGATGCTTCCACTCAAAATGGGTTGAATTCTAGACATCAAATCCCAACCAGAGAAGGTGCCACGAATACTTTGGATGATACTGCTTCTTTACTCCTTGGGATGAATGATGTTAGATCTGACAGGGCAAGAAGGCAAAGATCAGATAGCCCTTTCTCCTTTCCTCGCCAAAAACGTTCAGTAAGGCCCCGCTTGTACCTTTCCATTGATTCAGATTCAGAGTAA 2643 0.4351 MDLVPSVKEKLNYFRIKELKDVLTQLHLSKQGKKQDLVDRILSVLSDEQVSKIWAKKNAGGGKEQVAKLVDDTYRKMQISGATDLASKGQGASDSSSVKVKSEFDDAFQPDVKIRCLCGSRLETENLVKCDDARCHVWQHISCVIIPEKPTEGIPLVPDKFYCELCRLTRADPFWVSVAHPLHPVKLTTTSNPTDGNNPVQSVERTFQLTRADKDLVSKPEFDVEAWCMLLNDKVPFRMQWPQYTDLQVNGVPVRATNRPGSQLLGANGRDDGPIITPYTKDGINKISLTGCDARIFCLGVRIVKRRSMQQILNSIPKESDGEKFEDALARVCRCVGGGNAVDDADSDSDLEVVSDTFTVNLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMMNCGEEIAEIEVKPDGSWRVKVKSESERLELGNLAQWRLPDGTLCVSTAGDVKRVDTLKQVKQEGVSDCPAGLKLGIRKNRNGVWEVSKPEGTNTSSGNKLKGAFGNPEQVVIPMSSSATGSGRDGDDPSVNQGGGGHIDHSTTNGIEMDSLCLNNVDLAYEYNEPNTSAQVGGAEVIVLSDSEEDNDLLVSPAIAYKNNRNDATDGYSVPPPVIVDSYTEEHNLGGNSCLGLFPNDDEFGMSSLWSLPSGSQAGPGFQLFGSDADVSDALVHLQHGPMNCSSSLNGYALAPNTALGSGSILQESSAGRSDADLNGGLVDNPLAFGGDDPSLQIFLPTRPADSSMHNELRDQASVANGVCTEEDWISLSLGGGTGGNNGDASTQNGLNSRHQIPTREGATNTLDDTASLLLGMNDVRSDRARRQRSDSPFSFPRQKRSVRPRLYLSIDSDSE* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0584 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 336 448 IPR013083 -
Gso12g0584 880 Gene3D SAP domain 3 57 IPR036361 -
Gso12g0584 880 CDD PHD_Bye1p_SIZ1_like 115 166 - -
Gso12g0584 880 Pfam MIZ/SP-RING zinc finger 360 408 IPR004181 GO:0008270
Gso12g0584 880 MobiDBLite consensus disorder prediction 844 858 - -
Gso12g0584 880 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 812 - -
Gso12g0584 880 SUPERFAMILY SAP domain 1 58 IPR036361 -
Gso12g0584 880 MobiDBLite consensus disorder prediction 514 571 - -
Gso12g0584 880 MobiDBLite consensus disorder prediction 799 836 - -
Gso12g0584 880 Pfam PHD-finger 115 167 IPR019787 -
Gso12g0584 880 ProSiteProfiles Zinc finger SP-RING-type profile. 347 430 IPR004181 GO:0008270
Gso12g0584 880 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 812 - -
Gso12g0584 880 SMART PHD_3 115 167 IPR001965 -
Gso12g0584 880 SMART sap_9 11 45 IPR003034 -
Gso12g0584 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 172 IPR013083 -
Gso12g0584 880 MobiDBLite consensus disorder prediction 539 555 - -
Gso12g0584 880 MobiDBLite consensus disorder prediction 799 880 - -
Gso12g0584 880 Pfam SAP domain 12 42 IPR003034 -
Gso12g0584 880 SUPERFAMILY FYVE/PHD zinc finger 108 170 IPR011011 -
Gso12g0584 880 MobiDBLite consensus disorder prediction 515 531 - -
Gso12g0584 880 ProSitePatterns Zinc finger PHD-type signature. 116 166 IPR019786 -
Gso12g0584 880 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0584 Gso-Chr12 5263600 5272590 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso12g0584 PHD 7.3e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0584 - - gmx:100793735 1695.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0584 12 5263600 5272590 Gso11g1259 11 11622891 11633569 GST
Gso12g1434 12 37034462 37046866 Gso12g0584 12 5263600 5272590 PCT
Gso11g3398 11 49871867 49881006 Gso12g0584 12 5263600 5272590 PCT
Gso12g0584 12 5263600 5272590 Gso12g1434 12 37034462 37046866 PCT
Gso12g0584 12 5263600 5272590 Gso11g3398 11 49871867 49881006 PCT