Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0582 ATGGAAATTGATCTGAACCATGAAGTGACTGAGGCTGAGAAGAATGCATTCTGTGATAGGGAATGTGAGAAAGGTGCTGGTGCTGGTGCTGGTATTACTTGTTGGTCCTCTTCCACTTGTTCGTCCTCTTCAGCAGCTTGTGTGTCCTCTTCTTACCTTGAGCTTTGGCATGCTTGTGCTGGCCCTCTCACTTCTCTTCTCAAGAAAGGAAATGTGGTTGTCTATTTTCCACAAGGTCACTTAGAACAGGTTGCATCTTTCTCTCCTTTCACACCGTTGGAGATTCCCACCTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATGTCCAACTACTTGCCAACAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCTCAGCCGGAGTTGGAAGGGATGTATTCAGAGGGCAAAGAACTTGAGGAATTGGGAGCAGAAGAGGATGGAGATGAAAGATCACCAACTAAATCAACCCCTCACATGTTCTGCAAAACACTAACTGCCTCTGATACCAGCACACATGGGGGCTTTTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGACTATAAGCAGCAGAGGCCATCACAAGAGCTTGTTGCCAAAGACCTGCATGGTGTGGAGTGGAAATTTCGTCACATTTACAGAGGTCAGCCAAGGCGGCATCTACTCACTACTGGCTGGAGCATTTTTGTAAGCCAAAAGAATCTTGTCTCTGGTGATGCAGTGCTCTTCCTAAGGGGTGAAAATGGTGAACTGAGATTGGGAATCAGAAGAGCTGTTAGACCTAGAAATGATCTTCCTGAATCGGTTATCGGTAGCCAGAACTGCTATTCCAATGTCCTTTCTTCTGTGGCAAATGCAATATCCACCAAAAGCAAGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCACGCAGACTTTGTTGTTCCCTACCAAAAGTATGTTAAAAGCATCAAGAATCCAGTGAGCATTGGAACAAGATTTAAAATGAGATTTGAAATGGACGAATCTCAAGAGAGAAGGTGTAGTAGTGGGACGTTGATTGCAACGAGTGATTTGGATCCTTATAGATGGGCCAAATCAAAATGGAGGTGTTTGATGGTCAGATGGGATGAGGATATTGAAACTAATCATCAAGACCGAGTATCTCCATGGGAGATTGATCCTTCTGCTCCTCTGCCCCCCTTGAGCATTCAGTCTTCTCCAAGACTGAAGAAACTGCGGACAGGTCTACAGGTTGCCTCACCTAGTCACCTCATCACTGCAGCACGAGGCAGTGGATTGGTAGGCTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATGCAGGTTTTGTGTCATTCTACTACGGATGCGACACAGTAACCAAGCCACCAGGTTTTGAGATGAGCTCTCCGAGTCATCCAAATCTTGGATCAGCTGAAGTAAGAAAGGTTTCCTCTTCTGAGCTGAGTAGTGCCCACCCTTTCAGTTATGCAGGCTTTGTGGAAACTAACAGGTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTTCATTGAAATCCCTGACAGGAAAGGTTGATTTGAACCTTGGTGCTTGGGGAATGCCCAATCTAAGTTGCACAACTTTCAACCTCCACCAGGCAACCAAACCAAACTTTCAACCTTCATTGTTTCCTTACGGGGATATTCACCAAGCCGGTCAAGCTAGCTTGTTTTGCTCAAAATCCACCACTTTCCAGAGAGAAAATGTCCCATTTAACAAGCCATCCACTCAGGCAGGGATCATTGTAAATGAAGTTGGAAGATCAGATCTCCCAAATGAGCATAAGCTGCAGGACAATATTTCTTCTGCTGCAAATATGGGGGTTTCTAATGACAACAATGTCCAGGGAAAGGTAAATGCCTGCAAACTATTCGGGTTTTCTTTGTCTGGGGAAACTACTGCCCAAAATTTACAGAACTCTGCTAAAAGGAGCTGCACCAAGGTTCATAAGCAAGGCAGCTTAGTTGGAAGAGCTATTGATCTTTCAAGACTTAGCGGCTACAATGATCTGCTAAGTGAACTAGAGAGACTGTTTAGCATGGAAGGCCTTCTAAAAGATCCTGATAAGGGATGGAGGATTCTCTACACTGACAGTGAGAATGACATAATGGTTGTGGGGGATGATCCTTGGCATGAGTTTTGTGATGTGGTGTCCAAGATCCACATATACACCCAAGAAGAAGTGGAAAAGATGACAATTGGGATGATCAGTGATGATACTCATAGCTGTTTGGAAGAGGCACCAGTGATTATGGAGGCTTCAAAGTCTTCCTCGGTGGGTCAGCCAGATTATTCTCCAACGGCTGTTAGAGTCTAA 2379 0.4481 MEIDLNHEVTEAEKNAFCDRECEKGAGAGAGITCWSSSTCSSSSAACVSSSYLELWHACAGPLTSLLKKGNVVVYFPQGHLEQVASFSPFTPLEIPTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQPELEGMYSEGKELEELGAEEDGDERSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNDLPESVIGSQNCYSNVLSSVANAISTKSKFHVFYSPRASHADFVVPYQKYVKSIKNPVSIGTRFKMRFEMDESQERRCSSGTLIATSDLDPYRWAKSKWRCLMVRWDEDIETNHQDRVSPWEIDPSAPLPPLSIQSSPRLKKLRTGLQVASPSHLITAARGSGLVGFEESVRSPKVLQGQENAGFVSFYYGCDTVTKPPGFEMSSPSHPNLGSAEVRKVSSSELSSAHPFSYAGFVETNRFPRVLQGQEICSLKSLTGKVDLNLGAWGMPNLSCTTFNLHQATKPNFQPSLFPYGDIHQAGQASLFCSKSTTFQRENVPFNKPSTQAGIIVNEVGRSDLPNEHKLQDNISSAANMGVSNDNNVQGKVNACKLFGFSLSGETTAQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSGYNDLLSELERLFSMEGLLKDPDKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTQEEVEKMTIGMISDDTHSCLEEAPVIMEASKSSSVGQPDYSPTAVRV* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0582 792 SUPERFAMILY CAD & PB1 domains 667 743 - -
Gso12g0582 792 Pfam B3 DNA binding domain 166 267 IPR003340 GO:0003677
Gso12g0582 792 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 780 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso12g0582 792 SMART B3_2 166 268 IPR003340 GO:0003677
Gso12g0582 792 Pfam Auxin response factor 292 374 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso12g0582 792 ProSiteProfiles PB1 domain profile. 664 748 IPR000270 GO:0005515
Gso12g0582 792 SUPERFAMILY DNA-binding pseudobarrel domain 158 277 IPR015300 -
Gso12g0582 792 ProSiteProfiles B3 DNA-binding domain profile. 166 268 IPR003340 GO:0003677
Gso12g0582 792 Gene3D - 164 268 IPR015300 -
Gso12g0582 792 PANTHER AUXIN RESPONSE FACTOR 9 780 - -
Gso12g0582 792 Gene3D - 660 753 - -
Gso12g0582 792 CDD B3_DNA 164 266 IPR003340 GO:0003677
Gso12g0582 792 Gene3D - 329 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0582 Gso-Chr12 5233376 5241167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0582 48 792 B3 DNA Binding Superfamily AT5G60450 61.478 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso12g0582 B3 1.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0582 - - gmx:100783513 1563.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0582 12 5233376 5241167 Gso11g1262 11 11650837 11657680 GST
Gso12g1435 12 37048489 37055027 Gso12g0582 12 5233376 5241167 PCT
Gso11g3397 11 49862813 49868916 Gso12g0582 12 5233376 5241167 PCT
Gso12g0582 12 5233376 5241167 Gso12g1435 12 37048489 37055027 PCT
Gso12g0582 12 5233376 5241167 Gso11g3397 11 49862813 49868916 PCT