Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0578 ATGATGTCTGAAGAAACCTTTTCTGTTCCTCCCAACTCCACCATTAGAGCCACCTCCTTGGTTCATCATGTTCATGTTCAACCCCCAAGCCCAAACCCTAATTCAAATCCAGCTAAGAGAAGGAGAAGTCTACCCGGAACACCAGATCCAGATGCAGAAGTGGTGGCTCTTTCACCTAAGTCCCTAATGGCCACCAACCGTTTCTTATGTGAAGTTTGCAACAAGGGTTTTCAGAGAGACCAGAATTTGCAGCTGCATAGACGTGGACACAACCTTCCATGGAAACTGAAGAAGAGAACGAACAATGATCAAGTAAGGAAGAAGGTGTACGTGTGCCCTGAGAAGAGTTGCGTGTACCATGACCCCTCAAGAGCCTTGGGGGACTTGACAGGGATAAAGAAGCACTATAGCCGAAAGCATGGCGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATACGCTGTTCAATCCGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCATAACGCATAGAGCTTTTTGTGACGCTTTGGCTGAAGAAAGTGCGAGGGTAACAACAATTCCAGCAGCTTTAAGCAACTTGAGAAGTGATCACCATCATCATTTGACCAATGCTCAAGCTTCGAGAATCCCTCAGATTTTTTCAGGGTTTCACTCATCAGATCAATTCGGTGGTGGCTCATCAGAAGCATTATTGGCGAATCATCATTATCAACAAAAGCTAAGGCTACCACTATGGCTAGATCACCACCAAGTCAATAATCCTCAAGTACTTCACCACACTCTTGACAACTTCTCAACCGAACCGAGTGCTTTCACTTCAGGAACAAACTCTGTGCCTCATGATCTAGTACAAACAATGGACATGTTTGGGCCACAGACACAGTTTGTGAATTACCGTTACCCAGAAGCATCATTTGGAGGTGGCAATGCCAACTTGTCTGTGCTACCACCACATGGACTGAAGCAAGAACAAGAAGAAAACAAACAACACTTGTCGCATAGCGGAGCCTCTTCTAATAACTTGTACTTGAGTAATAGTATTCAGAACCCACCTCATCATCACTACATGTCAGCCACCACACTGTTGCAGAAAGCGGTTCAAATGGGTTCTACAAGGATCAGCGACAACGTATTTGGCTCCATCGTGGGTACCACCAACAGAAACAACAACAACAACAACAACACCAACCTTGAGGTTCAGAAGCTGAACGAGTTGGTGAGTGTGGAAGCTGGGTGCAACAACAACCTTGGAGGTGGTGGTGATGGGTATTTATTAAATGACTCGTTTGGGGTTGTGAATGGCACCAATAAGGGTTTGGAGCACATGGTGATGCCGGTGGATGAAGAGACACAACAAGAATCAATTGTGGGAAACTCACTATGCTCAAATAACAAAAATCAACTTGGTTTAACAAGAGACTTCTTGGGTGTTGGAGATAATAATAATAATCTTGACCCTATAAGAAGACCTTTTTTTCAACAAGACCTTGTTGAATTTAATGCAATGGGGTCAGCCTCAGCCTCAGTCATGAACCTGCAGAGCCAGTACGGTGGACACTACTGCTAG 1626 0.449 MMSEETFSVPPNSTIRATSLVHHVHVQPPSPNPNSNPAKRRRSLPGTPDPDAEVVALSPKSLMATNRFLCEVCNKGFQRDQNLQLHRRGHNLPWKLKKRTNNDQVRKKVYVCPEKSCVYHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARVTTIPAALSNLRSDHHHHLTNAQASRIPQIFSGFHSSDQFGGGSSEALLANHHYQQKLRLPLWLDHHQVNNPQVLHHTLDNFSTEPSAFTSGTNSVPHDLVQTMDMFGPQTQFVNYRYPEASFGGGNANLSVLPPHGLKQEQEENKQHLSHSGASSNNLYLSNSIQNPPHHHYMSATTLLQKAVQMGSTRISDNVFGSIVGTTNRNNNNNNNTNLEVQKLNELVSVEAGCNNNLGGGGDGYLLNDSFGVVNGTNKGLEHMVMPVDEETQQESIVGNSLCSNNKNQLGLTRDFLGVGDNNNNLDPIRRPFFQQDLVEFNAMGSASASVMNLQSQYGGHYC* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0578 541 SUPERFAMILY beta-beta-alpha zinc fingers 67 165 IPR036236 -
Gso12g0578 541 MobiDBLite consensus disorder prediction 24 51 - -
Gso12g0578 541 Gene3D Classic Zinc Finger 47 119 - -
Gso12g0578 541 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Gso12g0578 541 SMART c2h2final6 68 90 IPR013087 -
Gso12g0578 541 SMART c2h2final6 145 165 IPR013087 -
Gso12g0578 541 SMART c2h2final6 110 140 IPR013087 -
Gso12g0578 541 MobiDBLite consensus disorder prediction 342 369 - -
Gso12g0578 541 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 505 - -
Gso12g0578 541 Gene3D Classic Zinc Finger 120 202 - -
Gso12g0578 541 MobiDBLite consensus disorder prediction 351 369 - -
Gso12g0578 541 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Gso12g0578 541 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 27 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0578 Gso-Chr12 5175391 5178205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0578 38 213 IDZ Gene Family AT3G45260 84.091 3.52e-112 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso12g0578 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0578 K25870 - gmx:100781896 1050.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0578 12 5175391 5178205 Gso11g1266 11 11725913 11728938 GST
Gso12g1442 12 37183827 37187343 Gso12g0578 12 5175391 5178205 PCT
Gso11g3392 11 49801940 49804896 Gso12g0578 12 5175391 5178205 PCT
Gso12g0578 12 5175391 5178205 Gso12g1442 12 37183827 37187343 PCT
Gso12g0578 12 5175391 5178205 Gso11g3392 11 49801940 49804896 PCT