Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0576 ATGGGGAAGAAGAAGGATAGAATCGTTCTTCCACCGGAGCTTCCGCCGGAGATTCCTGACGAGGAAGTTGAAGTTTCCGACGATGACCTCCAATTCGTCAAGGAGAACCGCGCCTATGCCTCCTTGCTTTCCACCTTGGACACCCGTTCAATCACCAAGCATGTTACACGGGTTGCTGATGCCAAAGACGATGCATTGGAGAAACTTTATGAGAAACGCATGCAAAAGAATGCTCTCAAGAAAGAAAAAGAAGAAACTGGTTTGCAGGTTGATCGTGTAGATGCTCTTCCAATCAAGACATTGGATGGAAAGATCCATTACCGGACAGCTACGAAGACAGTATTGGAAAATGATCCAAGTGAAGAGAGAACTGGAGAGAATGTCAAAAAAGACAAAGGTATGGTCAAGCTAACTAAGGCTGAAAAGAGAGCCAAGCTTAAGAAAATGAGAAAAGACGCAAAACAACAAGGGAAAGAGGTGGCTAAAGCAGAAGTGGAAGAGACACCACAAGCAGCAGTATTGGCTGAGGTAAAGGAAGATCTTACAGCTGAGGAGGCATTTGAAAGTAAGAAGCATAAACTTGCAGAATTGGGGAATGCCTTGCTTACAGATCCAGAGTCCAATATTAAATTTTTGAAGGAGATGGTGCAGATATCTAAAGATAATGATGATACCATTGTTAAACTTGGACTTCTATCCCTCTTGGCTGTTTTCAAAGATATTGTCCCTGGCTATCGGATCAGGCTTCCTACTGAAAAGGAACTAGATATGAAGGTTTCAAAGACTGTTAGAAAGATGCGTTATTATGAGTCAACTCTTCTTTCTGCATACAAGGCATACTTGCAAAGGCTAGTAGCCTTAGAAAAGAAGCCTTTATTTCAGCATGTAGCAGTTCGTTGTATTTGTTCTTTGCTTGATGCAAATCCCCATTTCAACTTTCGTGAAAGTTTGTTGGATGCTACTGTCAGAAACATAAGCTCTCCTAATGACGCTATAAGGAAACTTTGTTGTTCCACAATTAATTCACTCTTTGCAAATGAGGGTAAACATGGGGGTGAAGTTACTGTGGAGGCTGTTCGATTGATTGCCGATCATGTTAAAGCTCATAATTGCCAAATGCACCCAGATTCCGTTGATGTTTTCTTGTCCCTTTCATTTGATGAGGATCTTGTGATGGCTAAAAGGATAGAAGATGATCAGAAATTTAAAAACAAAAAAAGTAAGAAAAGGAAAAACTTGGAGGCATCAAATCAGTTGGAGAATGATAGAAAGAAAAGTAAGAAAGAAATGATCTCTAAGACAAGAGAGGAGGTTGAAGCTGATTACAAGGCTGCATCCTTAGCCCCAGATGTTATGGAGAAGAAACAGATGCAAACTGAAACACTCTCTGCTGTCTTTGAGACATACTTTCGCATTTTGAAGAAGACAATGCAGTCCATAGGTGCCAGGCCTGAAGCAAACGCTGGGGCATTATCTGCTGCAGTGGAACCCCTCCCTTTGCTTGCTCCATGTCTGAAAGGACTGGCAAAATTTTCACATTTGATTGACCTTGATTTCATGGGTGATCTAATGAACCATCTGAGAGTACTTGCTTCTGGAAGTAGCAACTCAGGCAACACTTCTGACAAGTGTTCTAAATGTTTGACCGTATCAGAACGTCTCCAGTGTTGCATTGTTGCTTTTAAAGTGATGAGGAACAATCTTGATGCCTTGAATGTTGATTTACAGGACTTCTTTCTCCATCTTTACAATCTTGTACTTGAATACAGGCCAGGAAGAGATCAAGGAGAGGTGTTGGCAGAAGCTTTGAAGATAATGTTGTGTGATGATAAGCAACATGACATGCAGAAGACTGCTGCATTTATAAAACGATTAGCAACGCTTTCACTGTGTGTTGGATCAGCGGATTCCATGGCTGCCTTGGTCACAGTAAAGCATCTCCTTCAGAAGAATGTCAAATGCAGAAATTTATTGGAAAATGACATTGGAGGGGGCTCTGTTTCTGGCACAATTCATAAATATCTACCATATTCCACAGACCCCAATTTAAGTGGTGCCCTTGCCTCAGTACTTTGGGAACTCAATCTTTTGTCCAGTCATTATCATCCAGCTATATCAACACTGGCTTCGGGCATTTCAAGCATGAGTACTGCAAATAACCAGGTCCTTTTATCCAAGTCCTCTCCTCAACAAGCTTTTAAGGAAATGTCTCTGGACCAGGAATTATGTTTCACACAACAGAGTGACAGTATAAAATTAAATAACAAGAAGAGACGAGCAAATGGCCCTGCTATTTCACCTTCCATTGGTTCTACAACAGTTACAAATTCATTTGATGACAATGAGTTGAAAAGGAAACTTTGTTCCCATTTTATGGTTCTTCATGACATAAAGGAGAACGAAAGGTTGAGAAAGGAGTTGGATAGGACTACTCTATCACTACAGCTATATGAACAATATAAGAAACGATCAAAACAAAGTAGATGA 2487 0.4073 MGKKKDRIVLPPELPPEIPDEEVEVSDDDLQFVKENRAYASLLSTLDTRSITKHVTRVADAKDDALEKLYEKRMQKNALKKEKEETGLQVDRVDALPIKTLDGKIHYRTATKTVLENDPSEERTGENVKKDKGMVKLTKAEKRAKLKKMRKDAKQQGKEVAKAEVEETPQAAVLAEVKEDLTAEEAFESKKHKLAELGNALLTDPESNIKFLKEMVQISKDNDDTIVKLGLLSLLAVFKDIVPGYRIRLPTEKELDMKVSKTVRKMRYYESTLLSAYKAYLQRLVALEKKPLFQHVAVRCICSLLDANPHFNFRESLLDATVRNISSPNDAIRKLCCSTINSLFANEGKHGGEVTVEAVRLIADHVKAHNCQMHPDSVDVFLSLSFDEDLVMAKRIEDDQKFKNKKSKKRKNLEASNQLENDRKKSKKEMISKTREEVEADYKAASLAPDVMEKKQMQTETLSAVFETYFRILKKTMQSIGARPEANAGALSAAVEPLPLLAPCLKGLAKFSHLIDLDFMGDLMNHLRVLASGSSNSGNTSDKCSKCLTVSERLQCCIVAFKVMRNNLDALNVDLQDFFLHLYNLVLEYRPGRDQGEVLAEALKIMLCDDKQHDMQKTAAFIKRLATLSLCVGSADSMAALVTVKHLLQKNVKCRNLLENDIGGGSVSGTIHKYLPYSTDPNLSGALASVLWELNLLSSHYHPAISTLASGISSMSTANNQVLLSKSSPQQAFKEMSLDQELCFTQQSDSIKLNNKKRRANGPAISPSIGSTTVTNSFDDNELKRKLCSHFMVLHDIKENERLRKELDRTTLSLQLYEQYKKRSKQSR* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0576 828 MobiDBLite consensus disorder prediction 411 435 - -
Gso12g0576 828 Coils Coil 405 436 - -
Gso12g0576 828 Coils Coil 139 166 - -
Gso12g0576 828 MobiDBLite consensus disorder prediction 1 25 - -
Gso12g0576 828 PIRSF Noc3 2 811 IPR016903 -
Gso12g0576 828 MobiDBLite consensus disorder prediction 402 435 - -
Gso12g0576 828 Coils Coil 66 86 - -
Gso12g0576 828 PANTHER NUCLEOLAR COMPLEX PROTEIN 3 3 778 IPR016903 -
Gso12g0576 828 Pfam CBF/Mak21 family 554 709 IPR005612 -
Gso12g0576 828 Pfam Nucleolar complex-associated protein 190 280 IPR011501 -
Gso12g0576 828 SUPERFAMILY ARM repeat 205 587 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0576 Gso-Chr12 5155797 5165036 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0576 1 807 Core DNA Replication Machinery Family AT1G79150 58.120 0.0 906
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0576 K14834 - gmx:100794797 1569.29