Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0567 ATGGCTTCCTCCAACACTCCCAAACCCGAAAAGAAGAAGAGTACCAAAAAATCCGAAATCTCCAAAGCCGAAAAGAAGAAAACCAAAAACGCTGAAATCCCCAAAACCGATGGCAAAACGAAGAAGAACAAAGAAATCTCACAAGAGGAGAACAAGAAGAAGATTAAGAAGGCCAAGCTCAGCAACGGCACTTCAAAACAGCGAGACGAGGGATCCAAAAAGGGAGTAGCAGCAGAAGGAAACGGAGAAGAGGCGAAAATGAACGTGTTTCCGATGAATCGCATCAGGACGATGATTAAGGGCGAAGATCCCGAAATGCGTGTTTCTCAGGAAGCATTGTTTGCCATCAACAACACTGTGGAAAAGTTCCTTGAGCAGTTCACGCAGGACGCTTATGCCTTTTGTGCTCAGGACCGCAAGAAATGCCTCAGCTATGATCACCTAGCACATGTTGTAAGTAAGCAAAGGAGATATGACTTTCTCTCTGATTTTGTTCCTGAGAGAGTAAAAGCTGAGGATGCATTAAGAGAGAGAAGTGCAGCAGGAAAAGGAGGAAGTTAA 561 0.4456 MASSNTPKPEKKKSTKKSEISKAEKKKTKNAEIPKTDGKTKKNKEISQEENKKKIKKAKLSNGTSKQRDEGSKKGVAAEGNGEEAKMNVFPMNRIRTMIKGEDPEMRVSQEALFAINNTVEKFLEQFTQDAYAFCAQDRKKCLSYDHLAHVVSKQRRYDFLSDFVPERVKAEDALRERSAAGKGGS* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0567 186 MobiDBLite consensus disorder prediction 9 80 - -
Gso12g0567 186 Gene3D Histone, subunit A 4 167 IPR009072 GO:0046982
Gso12g0567 186 MobiDBLite consensus disorder prediction 1 89 - -
Gso12g0567 186 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED 7 183 - -
Gso12g0567 186 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 183 - -
Gso12g0567 186 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 90 152 IPR003958 -
Gso12g0567 186 SUPERFAMILY Histone-fold 89 168 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0567 Gso-Chr12 5098630 5100852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0567 58 151 CCAAT-HAP5 Transcription Factor Family AT1G07980 33.981 2.29e-16 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gso12g0567 CBFD_NFYB_HMF 2.4e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0567 - K03506 gmx:100500588 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0567 12 5098630 5100852 Gso11g1527 11 17756946 17759377 GST