Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0564 ATGCTCAATAAGACTCTTTCTTTTGCGATGGGGTGCTGTAGTTGCTTTGGGTTCATCAGGACACCTAACCGTCAAAGTCAAAGGTCTAAGCCTACTACTAACAATAATCTCTGCCAGGAGCCTCTGTTGGATGATGATATTGAGGATGAAGAGGGTGAGCCTTTGTACAATGATGAGGTTACTAACAATAGTGGAGATGAAGGTGCGGAGGAAACTCGTCCCAAGCGATCGGAAGAAATTTTGAACTTCAGAGTAGAGAATGGCATGATTTGTAGGCAGTTTCCTGTTAAGGAAACTCGCAAACTTGTTCGCAGCGAGGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTGGCTCTTTATCGAAGCTCTGTTGATGACAAGCATTATGCAATTAAGGCCTTTCATAAATCTTATTTACTGAAGCTTCGAGTTGCACCCTCAGAAACTGCCATGATGGATGTACTACGTGAGGTTCTCATTATGAAAATGCTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGACGGACAACTTCTACATGGTACTTGAATATGTTGAAGGAAAATGGATTTGTGAGGGTTCAGGTCCCACTTGTGGCTTAGGTGAAGAAACTGCTAGGAGATACTTGCGTGATATAGTTTCTGGATTAACATATCTCCATGCTCATGATGATAAAGATGAGCTTCGGCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGCATTTTAGGTGTGAAATATGGTGGTAAAGCTGCAGACACGTGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCTTTTCTTGGAGACACCCTTCAAGATACATATGACAAAATAGTCAATAATCCTTTAGTACTCCCCAACGACATGAATCCACCATTGAAAAACTTAATAGAAGGACTACTTTCCAAAGACCCAAGTTTAAGGATGACTTTGGGTGATGTTGCGGAAGATAGCTGGGTTATTGGAGATGATGGTCCAATTCCCGATTACCTTTGTTGGTGCAAAAGGAAGAGCTTGGGAATTGAGGACAATGATGAGAGCAATACTGACTAA 1131 0.4156 MLNKTLSFAMGCCSCFGFIRTPNRQSQRSKPTTNNNLCQEPLLDDDIEDEEGEPLYNDEVTNNSGDEGAEETRPKRSEEILNFRVENGMICRQFPVKETRKLVRSEDENGNKMINEYIREYKIGSGSYGKVALYRSSVDDKHYAIKAFHKSYLLKLRVAPSETAMMDVLREVLIMKMLEHPNIVNLIEVIDDPETDNFYMVLEYVEGKWICEGSGPTCGLGEETARRYLRDIVSGLTYLHAHDDKDELRRSPGTPVFTAPECILGVKYGGKAADTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNNPLVLPNDMNPPLKNLIEGLLSKDPSLRMTLGDVAEDSWVIGDDGPIPDYLCWCKRKSLGIEDNDESNTD* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0564 376 ProSiteProfiles Protein kinase domain profile. 117 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0564 376 MobiDBLite consensus disorder prediction 53 77 - -
Gso12g0564 376 MobiDBLite consensus disorder prediction 24 43 - -
Gso12g0564 376 CDD STKc_LKB1_CaMKK 123 346 - -
Gso12g0564 376 Gene3D Phosphorylase Kinase; domain 1 111 214 - -
Gso12g0564 376 Gene3D Transferase(Phosphotransferase) domain 1 241 363 - -
Gso12g0564 376 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 1 243 - -
Gso12g0564 376 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 243 376 - -
Gso12g0564 376 MobiDBLite consensus disorder prediction 24 40 - -
Gso12g0564 376 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 243 376 - -
Gso12g0564 376 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 1 243 - -
Gso12g0564 376 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Gso12g0564 376 SUPERFAMILY Protein kinase-like (PK-like) 108 353 IPR011009 -
Gso12g0564 376 Pfam Protein kinase domain 119 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0564 376 Pfam Protein kinase domain 248 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0564 Gso-Chr12 5069264 5076412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0564 123 353 CBL-interacting serine-threonine protein kinases AT5G35410 30.682 7.52e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Gso12g0564 Pkinase 3.5e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0564 K00908 - gmx:100789178 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0564 12 5069264 5076412 Gso11g1522 11 17722239 17728205 GST