Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso12g0561 | ATGGCGGAACCTCTCTCAAACACCGAACTCTCTTCTTCCAAAACCCTGGACCCAACCAACGGTCACGATTCCACTTCGGAACCGCATCAAACGGCTCCGGAAGACGCTCAGCTCAATCGAGAAGACGACGTTGTTCCAACCGCGAAACGGAAGAGGGACGACGACGTCGAAGACCGTTCGCTGCATCCGCTGTGGAAGACCAGCCTATGCTCTTACTTCCGGAGCCACAACGGATCGTGCAGCCACGGCGGCGCTTGCCGATACGCGCACGGCGAGGAGGAGCTCCGCCCCCGCCCCGACAACACGTGGGACCCGACCTCCGAGCGCGCGAAGAAAGCGCTGAAGACCGAGTCGGACGAAAAGCGCGCCGTCTCGGAGGAAGTGATGATGACGGAGGCCGTCGTGGACGACGGTGATGACGGTTGTGGCGCGAATCACGCGCTTAACATATGCTTGGTGCATTTGCCGCGGAAATGGAGCTCCGAGAATTTGAGGACTTTTCTCGGCGAACAGGGCATACCTTTTAAGCATGCTAAGAAAAAGAAAGGCATGATGATTGGTTTTGTTACTTTTGAAGATGAAGAACAGTTGAAGAGTTCAACAATGGAATTAGAAGGAAAATCAATTGGCAACAAAACGGTAAAGGTTGCTAATGTTCTTCCTCGGTCATTCGAAAAGAAAAGTAATGCCATTGTTGCATCCCGTCAAGAATTAGACGAGGAAAATGCAGGGGTTGATGTTGCTTCAAGTGGGACTTTGGATGGTGAAACAAATAATGATAACTTGGCAAAGACAAGAAATGTGCGTGATGCAGTGACTCCTCTAGCTCACATGGCCTATGCCGATCAGTTGGAGCAGAAAACAAGCTCCCTCATGCAGATTCTCAAAAAACTTACTAGAAATGCTCGTAAAGCTTGTCCAAATGGTGTTTCTCTTCCTGAATGGATTCTCAAGTCTAGGGAAATAGGTGGTCTTCCGTGCAAACTAGAGGGTATTATTGCATCCCCTATTGTAAATGGATACCGTAACAAGTGTGAGTTTTCTGTTGGATATTCTCTGGAAGGCAAAGTGACAGTAGGTTTCATGCTTGGAAACTTCAGGGAAGGTGTAACAGCAGTTGAGGAAGCAGTGGACTGCCCAAACGTTTCAACAGTTGCTTGCAAATATGCTACAATCTTTCAGGAATTTCTACAGGACAGTGATTTACCAGTTTGGAACAGATTTAAAAATACTGGTTTTTGGCGTCAATTGACGGTTCGAGAAGGGAGAACAAATGGGAATGTTGTTGATGCTGAAACGTTTAGTGGTGTTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGCAAGCTTTGATGATGCAAAAGTAGCTGCTGAGTTCAAGAGGCTTGCTCAGGCATTTGTTGCCGGAGCTACTTCGCATTGCCCAATATTACCCCTTACAGCTCTGGTTGTTCAGGATCACCAAGGAATATCCAATGTGGCACCAGCTGATGCACCACTGCATTCACTTCCCATTCCTAAAGCAGCTGGTGATCCTGAGGTGGATGAAAATAATAATGCCAAGGATGTAAGAATCCATGATCATATCAACAATCTCCAGTTTTCTATATCTCCAACAGCATTTTTTCAGGTTAACACTCTTGCTGCTGAGAAGTTGTACTCACTTGCTGGAGATTGGTCATGCTTAGGTCCTGACACACTGCTATTTGATATATGCTGTGGGACAGGAACAATTGGCCTGACATTAGCACATCGAGTTGGTATGGTGATTGGAATTGAAATGAATGCTTCTGCTGTATCTGATGCGCATAGGAATGCTGAGATTAATGGCATAAAAAACGTTAAATTTATATGTTCGAAGGCAGAGGACGTGATGGGATCTCTGTTAAGGGAATACCTGAATGTGACTAGGGAACAAGTTGATGATCCTAATATCTCTGGAAGCGGCAATGACATTCCTAAGGATAGTGCCTGCCCAGAACCTGAAAATTGTGAAATAGCATCTCGTTGTCCAGAAAATAACATTGCCGAAGTTGGAAGTGAGGTTCAGAAGGGTTGCACTTGTGAACAAGCTGATGGGATCTCTGAACAGGCTGAGGACGTGATGGGATCTCTGTTAAGGGGTGATGCTAATGTGGCCAAGGAACAAAGTGATGATCCAAATGTCTCTGGAAGTAGCAATGACATTCCTGTGGATGGTACCTGCCCAGAGCCTGAAAATGGTGAAATTACATCTCACTCAGAAAATAACAATGCAGAAGTTGGAGGTGAGGTTCAGAAGGGTATCAGTTCTGAAAATGGGAAGACTTCACTGCAACAGTTCAAAAATGTTGTTGCTATTGTTGATCCTCCACGTGCTGGACTTCATCCAACTGTGATCAAAGCTTTGAGAACTCATCCAGGCCTGCGGAGGCTTGTTTACATATCCTGTAATCCTGAAACTTTGGTGGCAAATGCTATTGAGCTTTGTACGCCATCCCCCGTAAAAATTGAGAAAGGAAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGTTTAGCACGGCACAGGGCCAAGTCTATGCCCATCTCAGAGGCATTCCATCCCGTAAAGGCTATGGCTGTTGATCTTTTTCCACATACTCCACACTGTGAATTGGTTATGCTTCTTGAGAGGTAG | 2667 | 0.4608 | MAEPLSNTELSSSKTLDPTNGHDSTSEPHQTAPEDAQLNREDDVVPTAKRKRDDDVEDRSLHPLWKTSLCSYFRSHNGSCSHGGACRYAHGEEELRPRPDNTWDPTSERAKKALKTESDEKRAVSEEVMMTEAVVDDGDDGCGANHALNICLVHLPRKWSSENLRTFLGEQGIPFKHAKKKKGMMIGFVTFEDEEQLKSSTMELEGKSIGNKTVKVANVLPRSFEKKSNAIVASRQELDEENAGVDVASSGTLDGETNNDNLAKTRNVRDAVTPLAHMAYADQLEQKTSSLMQILKKLTRNARKACPNGVSLPEWILKSREIGGLPCKLEGIIASPIVNGYRNKCEFSVGYSLEGKVTVGFMLGNFREGVTAVEEAVDCPNVSTVACKYATIFQEFLQDSDLPVWNRFKNTGFWRQLTVREGRTNGNVVDAETFSGVAEVMLIVQVSTASFDDAKVAAEFKRLAQAFVAGATSHCPILPLTALVVQDHQGISNVAPADAPLHSLPIPKAAGDPEVDENNNAKDVRIHDHINNLQFSISPTAFFQVNTLAAEKLYSLAGDWSCLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNVKFICSKAEDVMGSLLREYLNVTREQVDDPNISGSGNDIPKDSACPEPENCEIASRCPENNIAEVGSEVQKGCTCEQADGISEQAEDVMGSLLRGDANVAKEQSDDPNVSGSSNDIPVDGTCPEPENGEITSHSENNNAEVGGEVQKGISSENGKTSLQQFKNVVAIVDPPRAGLHPTVIKALRTHPGLRRLVYISCNPETLVANAIELCTPSPVKIEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFHPVKAMAVDLFPHTPHCELVMLLER* | 889 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso12g0561 | 888 | Pfam | Methyltransferase domain | 569 | 627 | IPR025714 | - | |
Gso12g0561 | 888 | Gene3D | Vaccinia Virus protein VP39 | 747 | 888 | IPR029063 | - | |
Gso12g0561 | 888 | ProSitePatterns | RNA methyltransferase trmA family signature 1. | 783 | 815 | IPR030390 | - | |
Gso12g0561 | 888 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Gso12g0561 | 888 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 273 | 888 | IPR029063 | - | |
Gso12g0561 | 888 | PANTHER | TRNA (URACIL-5-)-METHYLTRANSFERASE | 80 | 888 | IPR045850 | - | |
Gso12g0561 | 888 | MobiDBLite | consensus disorder prediction | 97 | 122 | - | - | |
Gso12g0561 | 888 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 65 | 92 | IPR000571 | GO:0046872 | |
Gso12g0561 | 888 | SMART | c3hfinal6 | 64 | 92 | IPR000571 | GO:0046872 | |
Gso12g0561 | 888 | MobiDBLite | consensus disorder prediction | 242 | 262 | - | - | |
Gso12g0561 | 888 | Coils | Coil | 281 | 301 | - | - | |
Gso12g0561 | 888 | Gene3D | - | 144 | 236 | IPR012677 | - | |
Gso12g0561 | 888 | SUPERFAMILY | RNA-binding domain, RBD | 146 | 227 | IPR035979 | GO:0003676 | |
Gso12g0561 | 888 | MobiDBLite | consensus disorder prediction | 34 | 58 | - | - | |
Gso12g0561 | 888 | ProSiteProfiles | Zinc finger C3H1-type profile. | 64 | 93 | IPR000571 | GO:0046872 | |
Gso12g0561 | 888 | MobiDBLite | consensus disorder prediction | 715 | 753 | - | - | |
Gso12g0561 | 888 | SUPERFAMILY | CCCH zinc finger | 62 | 97 | IPR036855 | GO:0046872 | |
Gso12g0561 | 888 | Pfam | tRNA (Uracil-5-)-methyltransferase | 771 | 824 | IPR010280 | GO:0006396|GO:0008173 | |
Gso12g0561 | 888 | Gene3D | - | 342 | 542 | - | - | |
Gso12g0561 | 888 | MobiDBLite | consensus disorder prediction | 717 | 731 | - | - | |
Gso12g0561 | 888 | CDD | AdoMet_MTases | 571 | 625 | - | - | |
Gso12g0561 | 888 | Gene3D | - | 58 | 98 | - | - | |
Gso12g0561 | 888 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Gso12g0561 | 888 | PANTHER | TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A | 80 | 888 | - | - | |
Gso12g0561 | 888 | Gene3D | Vaccinia Virus protein VP39 | 543 | 642 | IPR029063 | - | |
Gso12g0561 | 888 | CDD | RRM_SF | 150 | 216 | - | - | |
Gso12g0561 | 888 | ProSiteProfiles | SAM-dependent methyltransferase RNA m(5)U-type domain profile. | 271 | 888 | IPR010280 | GO:0006396|GO:0008173 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso12g0561 | Gso-Chr12 | 5041135 | 5046798 | Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Gso12g0561 | tRNA_U5-meth_tr | 1.4e-08 | CL0063 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso12g0561 | K15332 | - | gmx:100777601 | 1782.69 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso12g0561 | 12 | 5041135 | 5046798 | Gso11g1518 | 11 | 17694398 | 17700002 | GST |