Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0561 ATGGCGGAACCTCTCTCAAACACCGAACTCTCTTCTTCCAAAACCCTGGACCCAACCAACGGTCACGATTCCACTTCGGAACCGCATCAAACGGCTCCGGAAGACGCTCAGCTCAATCGAGAAGACGACGTTGTTCCAACCGCGAAACGGAAGAGGGACGACGACGTCGAAGACCGTTCGCTGCATCCGCTGTGGAAGACCAGCCTATGCTCTTACTTCCGGAGCCACAACGGATCGTGCAGCCACGGCGGCGCTTGCCGATACGCGCACGGCGAGGAGGAGCTCCGCCCCCGCCCCGACAACACGTGGGACCCGACCTCCGAGCGCGCGAAGAAAGCGCTGAAGACCGAGTCGGACGAAAAGCGCGCCGTCTCGGAGGAAGTGATGATGACGGAGGCCGTCGTGGACGACGGTGATGACGGTTGTGGCGCGAATCACGCGCTTAACATATGCTTGGTGCATTTGCCGCGGAAATGGAGCTCCGAGAATTTGAGGACTTTTCTCGGCGAACAGGGCATACCTTTTAAGCATGCTAAGAAAAAGAAAGGCATGATGATTGGTTTTGTTACTTTTGAAGATGAAGAACAGTTGAAGAGTTCAACAATGGAATTAGAAGGAAAATCAATTGGCAACAAAACGGTAAAGGTTGCTAATGTTCTTCCTCGGTCATTCGAAAAGAAAAGTAATGCCATTGTTGCATCCCGTCAAGAATTAGACGAGGAAAATGCAGGGGTTGATGTTGCTTCAAGTGGGACTTTGGATGGTGAAACAAATAATGATAACTTGGCAAAGACAAGAAATGTGCGTGATGCAGTGACTCCTCTAGCTCACATGGCCTATGCCGATCAGTTGGAGCAGAAAACAAGCTCCCTCATGCAGATTCTCAAAAAACTTACTAGAAATGCTCGTAAAGCTTGTCCAAATGGTGTTTCTCTTCCTGAATGGATTCTCAAGTCTAGGGAAATAGGTGGTCTTCCGTGCAAACTAGAGGGTATTATTGCATCCCCTATTGTAAATGGATACCGTAACAAGTGTGAGTTTTCTGTTGGATATTCTCTGGAAGGCAAAGTGACAGTAGGTTTCATGCTTGGAAACTTCAGGGAAGGTGTAACAGCAGTTGAGGAAGCAGTGGACTGCCCAAACGTTTCAACAGTTGCTTGCAAATATGCTACAATCTTTCAGGAATTTCTACAGGACAGTGATTTACCAGTTTGGAACAGATTTAAAAATACTGGTTTTTGGCGTCAATTGACGGTTCGAGAAGGGAGAACAAATGGGAATGTTGTTGATGCTGAAACGTTTAGTGGTGTTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGCAAGCTTTGATGATGCAAAAGTAGCTGCTGAGTTCAAGAGGCTTGCTCAGGCATTTGTTGCCGGAGCTACTTCGCATTGCCCAATATTACCCCTTACAGCTCTGGTTGTTCAGGATCACCAAGGAATATCCAATGTGGCACCAGCTGATGCACCACTGCATTCACTTCCCATTCCTAAAGCAGCTGGTGATCCTGAGGTGGATGAAAATAATAATGCCAAGGATGTAAGAATCCATGATCATATCAACAATCTCCAGTTTTCTATATCTCCAACAGCATTTTTTCAGGTTAACACTCTTGCTGCTGAGAAGTTGTACTCACTTGCTGGAGATTGGTCATGCTTAGGTCCTGACACACTGCTATTTGATATATGCTGTGGGACAGGAACAATTGGCCTGACATTAGCACATCGAGTTGGTATGGTGATTGGAATTGAAATGAATGCTTCTGCTGTATCTGATGCGCATAGGAATGCTGAGATTAATGGCATAAAAAACGTTAAATTTATATGTTCGAAGGCAGAGGACGTGATGGGATCTCTGTTAAGGGAATACCTGAATGTGACTAGGGAACAAGTTGATGATCCTAATATCTCTGGAAGCGGCAATGACATTCCTAAGGATAGTGCCTGCCCAGAACCTGAAAATTGTGAAATAGCATCTCGTTGTCCAGAAAATAACATTGCCGAAGTTGGAAGTGAGGTTCAGAAGGGTTGCACTTGTGAACAAGCTGATGGGATCTCTGAACAGGCTGAGGACGTGATGGGATCTCTGTTAAGGGGTGATGCTAATGTGGCCAAGGAACAAAGTGATGATCCAAATGTCTCTGGAAGTAGCAATGACATTCCTGTGGATGGTACCTGCCCAGAGCCTGAAAATGGTGAAATTACATCTCACTCAGAAAATAACAATGCAGAAGTTGGAGGTGAGGTTCAGAAGGGTATCAGTTCTGAAAATGGGAAGACTTCACTGCAACAGTTCAAAAATGTTGTTGCTATTGTTGATCCTCCACGTGCTGGACTTCATCCAACTGTGATCAAAGCTTTGAGAACTCATCCAGGCCTGCGGAGGCTTGTTTACATATCCTGTAATCCTGAAACTTTGGTGGCAAATGCTATTGAGCTTTGTACGCCATCCCCCGTAAAAATTGAGAAAGGAAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGTTTAGCACGGCACAGGGCCAAGTCTATGCCCATCTCAGAGGCATTCCATCCCGTAAAGGCTATGGCTGTTGATCTTTTTCCACATACTCCACACTGTGAATTGGTTATGCTTCTTGAGAGGTAG 2667 0.4608 MAEPLSNTELSSSKTLDPTNGHDSTSEPHQTAPEDAQLNREDDVVPTAKRKRDDDVEDRSLHPLWKTSLCSYFRSHNGSCSHGGACRYAHGEEELRPRPDNTWDPTSERAKKALKTESDEKRAVSEEVMMTEAVVDDGDDGCGANHALNICLVHLPRKWSSENLRTFLGEQGIPFKHAKKKKGMMIGFVTFEDEEQLKSSTMELEGKSIGNKTVKVANVLPRSFEKKSNAIVASRQELDEENAGVDVASSGTLDGETNNDNLAKTRNVRDAVTPLAHMAYADQLEQKTSSLMQILKKLTRNARKACPNGVSLPEWILKSREIGGLPCKLEGIIASPIVNGYRNKCEFSVGYSLEGKVTVGFMLGNFREGVTAVEEAVDCPNVSTVACKYATIFQEFLQDSDLPVWNRFKNTGFWRQLTVREGRTNGNVVDAETFSGVAEVMLIVQVSTASFDDAKVAAEFKRLAQAFVAGATSHCPILPLTALVVQDHQGISNVAPADAPLHSLPIPKAAGDPEVDENNNAKDVRIHDHINNLQFSISPTAFFQVNTLAAEKLYSLAGDWSCLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNVKFICSKAEDVMGSLLREYLNVTREQVDDPNISGSGNDIPKDSACPEPENCEIASRCPENNIAEVGSEVQKGCTCEQADGISEQAEDVMGSLLRGDANVAKEQSDDPNVSGSSNDIPVDGTCPEPENGEITSHSENNNAEVGGEVQKGISSENGKTSLQQFKNVVAIVDPPRAGLHPTVIKALRTHPGLRRLVYISCNPETLVANAIELCTPSPVKIEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFHPVKAMAVDLFPHTPHCELVMLLER* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0561 888 Pfam Methyltransferase domain 569 627 IPR025714 -
Gso12g0561 888 Gene3D Vaccinia Virus protein VP39 747 888 IPR029063 -
Gso12g0561 888 ProSitePatterns RNA methyltransferase trmA family signature 1. 783 815 IPR030390 -
Gso12g0561 888 MobiDBLite consensus disorder prediction 1 33 - -
Gso12g0561 888 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 273 888 IPR029063 -
Gso12g0561 888 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 80 888 IPR045850 -
Gso12g0561 888 MobiDBLite consensus disorder prediction 97 122 - -
Gso12g0561 888 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 65 92 IPR000571 GO:0046872
Gso12g0561 888 SMART c3hfinal6 64 92 IPR000571 GO:0046872
Gso12g0561 888 MobiDBLite consensus disorder prediction 242 262 - -
Gso12g0561 888 Coils Coil 281 301 - -
Gso12g0561 888 Gene3D - 144 236 IPR012677 -
Gso12g0561 888 SUPERFAMILY RNA-binding domain, RBD 146 227 IPR035979 GO:0003676
Gso12g0561 888 MobiDBLite consensus disorder prediction 34 58 - -
Gso12g0561 888 ProSiteProfiles Zinc finger C3H1-type profile. 64 93 IPR000571 GO:0046872
Gso12g0561 888 MobiDBLite consensus disorder prediction 715 753 - -
Gso12g0561 888 SUPERFAMILY CCCH zinc finger 62 97 IPR036855 GO:0046872
Gso12g0561 888 Pfam tRNA (Uracil-5-)-methyltransferase 771 824 IPR010280 GO:0006396|GO:0008173
Gso12g0561 888 Gene3D - 342 542 - -
Gso12g0561 888 MobiDBLite consensus disorder prediction 717 731 - -
Gso12g0561 888 CDD AdoMet_MTases 571 625 - -
Gso12g0561 888 Gene3D - 58 98 - -
Gso12g0561 888 MobiDBLite consensus disorder prediction 1 58 - -
Gso12g0561 888 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A 80 888 - -
Gso12g0561 888 Gene3D Vaccinia Virus protein VP39 543 642 IPR029063 -
Gso12g0561 888 CDD RRM_SF 150 216 - -
Gso12g0561 888 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 271 888 IPR010280 GO:0006396|GO:0008173
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0561 Gso-Chr12 5041135 5046798 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso12g0561 tRNA_U5-meth_tr 1.4e-08 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0561 K15332 - gmx:100777601 1782.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0561 12 5041135 5046798 Gso11g1518 11 17694398 17700002 GST