Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0560 ATGAATGGTACAGAGGAAAAGCCTATGACTGTGAGTGAGGAACATGATGCAGGTTCTTGCAGAAGAACAGTTTCTCTTCCCGTTCAAAAGGTTGATAATCCAATGGGGATAACTGAAGAAACCACACATGTTCCTCCTCGGAAGCGACAGAATCTTCTTCTAGAGATACCCTCAAGAACAGAAGAGTGTTCTCAAGAATTTGTTGCTATCAAAATACCACCGACACCAAGTTCCAATCCCACTCCTACTCCAAAGAGAGTGAATTTTCTTGTGAGTTCTCACTCTGTTGATCCTCCAACATATAATTCTCCTGGGCCTTCAACATCAAGAAGCAAATCATCCATTAGAAGCCTGCTTCCAAAACTGAGCTTCAGGTATCGAACACCAATAGATATTGAAAAACCTAATGCTGCAGCTCCAGAAATTTCCTCTTCAGGCATTGGAGAAAAGTCTTCAATCTCAAGATCATTGTCTCTTACTAAGATATTTACTCCTAGGATTAAGAGAACGTCATCATTACCACTGGATGAAATTAGACAATCAAACAATGAATCTTCTCATGGTGGAAGTGTTGGTGGTCCCTTAAACAAAAGAGAAACCCAGCGGAAGATAGCTCGCTCTCTTTCAGTACCTGCCAACAACAAGGATAAAAGCATAAGGAGGATGGATTCATTTTTCCGTGTTGTTCCTTCCACTCCTCGAGTAAAAGAAGGAAATGAATTGTTGGCCACACCCACAACAAATGACACTGAAAACGAAGATGCTAATGGTGAAGATATAGCTGAAGAAGAGGCTGTGTGTAGAATATGTCTGGTTGATTTGTGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGTAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCAATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGCGATGTGTGCAAGGAGGAAGTTCGAAACTTACCTGTCACACTATTACGGATCCAAAGTGTTCGAAATCGGAATAATGGTGGAAATAGGTCTCAATTTGAAGATGTAAATGGATACAGAGTTTGGCAGGAAGTCCCAGTGCTTGTCATTGTTAGCATGCTTGCCTATTTCTGTTTCCTTGAGCAGCTATTGGTTGGAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTATTGGGTCTACTCTCCTCCATGACATCATCAACAATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGCTCAGTTTGCTCTGGTGGTTCTCTTTGCACACATATTTTACTCCGTGGTTCATGTGCAAGCAGTTCTGTCAATCCTTCTGGCTACATTTGCTGGCTTTGGTGTGGTGATGAGTGGAAGTTCTATTCTTGTGGAGTTTTTTAGATGGAGGAGAAGAGTGCAGGCTCTACAAGAGCAGCAACATGGGCCGCAACTGATGCCACAGGCAGCACAAAATCCTCGAACTCCAAACACGCCGCGTCCAGGTTCAGGGTCAGGTCCTTCCAATCACAGTCAACCTGTGGTGCAAAGTCAACAGAACTCAAATCAGAGCTGA 1560 0.4295 MNGTEEKPMTVSEEHDAGSCRRTVSLPVQKVDNPMGITEETTHVPPRKRQNLLLEIPSRTEECSQEFVAIKIPPTPSSNPTPTPKRVNFLVSSHSVDPPTYNSPGPSTSRSKSSIRSLLPKLSFRYRTPIDIEKPNAAAPEISSSGIGEKSSISRSLSLTKIFTPRIKRTSSLPLDEIRQSNNESSHGGSVGGPLNKRETQRKIARSLSVPANNKDKSIRRMDSFFRVVPSTPRVKEGNELLATPTTNDTENEDANGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNRNNGGNRSQFEDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASAQFALVVLFAHIFYSVVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRVQALQEQQHGPQLMPQAAQNPRTPNTPRPGSGSGPSNHSQPVVQSQQNSNQS* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0560 519 MobiDBLite consensus disorder prediction 71 116 - -
Gso12g0560 519 MobiDBLite consensus disorder prediction 1 20 - -
Gso12g0560 519 SMART ringv_2 266 315 IPR011016 GO:0008270
Gso12g0560 519 MobiDBLite consensus disorder prediction 475 519 - -
Gso12g0560 519 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 322 IPR013083 -
Gso12g0560 519 ProSiteProfiles Zinc finger RING-CH-type profile. 259 321 IPR011016 GO:0008270
Gso12g0560 519 MobiDBLite consensus disorder prediction 1 45 - -
Gso12g0560 519 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 23 488 - -
Gso12g0560 519 MobiDBLite consensus disorder prediction 174 190 - -
Gso12g0560 519 Pfam RING-variant domain 267 314 IPR011016 GO:0008270
Gso12g0560 519 SUPERFAMILY RING/U-box 263 318 - -
Gso12g0560 519 MobiDBLite consensus disorder prediction 82 116 - -
Gso12g0560 519 CDD RING_CH-C4HC3_MARCH 267 315 - -
Gso12g0560 519 MobiDBLite consensus disorder prediction 173 199 - -
Gso12g0560 519 PANTHER OS02G0165000 PROTEIN 23 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0560 Gso-Chr12 5022514 5028573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0560 264 321 C3H Transcription Factor Family AT2G37950 49.153 3.69e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0560 - - gmx:100788108 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0560 12 5022514 5028573 Gso11g1517 11 17682022 17687676 GST
Gso11g3385 11 49735068 49739692 Gso12g0560 12 5022514 5028573 PCT
Gso12g0560 12 5022514 5028573 Gso11g3385 11 49735068 49739692 PCT