Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0545 ATGGGACTTTATAGCAAAGGTTTGAATAGAACAGGTAAGAGTTGCAGATTACGGTGGGTTAATTACCTCCACCCCGATCTCAAACGAGGGAAGCTCACACCCCAAGAACAACACCTCGTCATGGACCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGCAAGCTACCAGGGCGCACTGACAATGAGATTAAGAATTATTGGAGGACTCACATGAGAAAGAAAAAGGCTCTGGAGAAAAAGCATGCATCAGCATCAGCATCATCACCTGTTTCTTCTAGTTGTCAATCTTCACTATCTTCAAACAACCATGTTGTGGATTCACATGCTTCCAAAGAGAGCTTTTATGACACAGGTGGATATGATGACATGATGATGGGGTTAATTGGTGGTGAAAAGGGGTACTCTATGGATGATATATGGAAAGATATTGTTTTGTCAGGAGAAGAGAACAGCATTTATAACAACAATAATCTGCAACCTGTGTATGAAGAAGGGCATAGTGAAGAGGGATGCAACTTCTCTTGTCCTCCACCAATGATGATTATGCCTTCTCCACCATCATGGGATCAGTACAACATTTCTTCTCAACCCCTCTGGGTGATGGATGAAGAAGAAAGTAACAAGATGTTATTCCCTACACTAAGTGACCAATATTTTTCTCACTATGAACAAGGGAACGAATTTCTGACCGGCTAA 705 0.417 MGLYSKGLNRTGKSCRLRWVNYLHPDLKRGKLTPQEQHLVMDLHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKKALEKKHASASASSPVSSSCQSSLSSNNHVVDSHASKESFYDTGGYDDMMMGLIGGEKGYSMDDIWKDIVLSGEENSIYNNNNLQPVYEEGHSEEGCNFSCPPPMMIMPSPPSWDQYNISSQPLWVMDEEESNKMLFPTLSDQYFSHYEQGNEFLTG* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0545 234 CDD SANT 33 74 IPR001005 -
Gso12g0545 234 MobiDBLite consensus disorder prediction 87 107 - -
Gso12g0545 234 Gene3D - 32 75 - -
Gso12g0545 234 Pfam Myb-like DNA-binding domain 29 73 IPR001005 -
Gso12g0545 234 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 7 214 - -
Gso12g0545 234 MobiDBLite consensus disorder prediction 80 107 - -
Gso12g0545 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 78 IPR017930 -
Gso12g0545 234 ProSiteProfiles Myb-like domain profile. 24 74 IPR001005 -
Gso12g0545 234 SUPERFAMILY Homeodomain-like 9 80 IPR009057 -
Gso12g0545 234 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 7 214 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso12g0545 234 Gene3D - 4 28 - -
Gso12g0545 234 SMART sant 28 76 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0545 Gso-Chr12 4888640 4890185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0545 7 229 MYB Transcription Factor Family AT5G59780 48.661 3.15e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso12g0545 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0545 K09422 - gmx:100776886 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0545 12 4888640 4890185 Gso11g1208 11 10938183 10939746 GST
Gso12g0545 12 4888640 4890185 Gso15g0360 15 3243440 3245072 PCT
Gso12g0545 12 4888640 4890185 Gso11g3445 11 50379084 50380710 PCT