Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0543 ATGAAGAGAGGCAGAGATAAGGAGAGTGAGGTGGGCATGGCTAATTGTTTGATGTTACTGACCAAAGTTGGTGAAACTGAAACCCCATCAAGAGAGAGGGTTCTAAGTTGTGGTGATTTTAGGTGCAAGACATGTAACAGGAAATTCCATTCGTTTCAAGCACTTGGGGGCCACCGAGCCAGCCACAAGAAGCTAAAACTCATGGCTTCAAACCTTTCGTGTTCGATGGCACAAAAAAAGCACCAGTGCCCCATTTGTGGGCTTGAGTTTGGGATTGGACAAGCCCTCGGAGGGCACATGAGAAAACATAGATCAGCTTCCTTAAATGAAGGTTTGATAACTCACGATCATGCTGTGCCAACATCTAATGGTGCTGAAAGGCTTCGTTTGTGCTTGGACTCGAACTTGGGACCGTACGAGAATGATCTCAACCTCATTTTAAGGACACCTGTTTTAAATTTGTTCATTTGA 471 0.448 MKRGRDKESEVGMANCLMLLTKVGETETPSRERVLSCGDFRCKTCNRKFHSFQALGGHRASHKKLKLMASNLSCSMAQKKHQCPICGLEFGIGQALGGHMRKHRSASLNEGLITHDHAVPTSNGAERLRLCLDSNLGPYENDLNLILRTPVLNLFI* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0543 156 Pfam C2H2-type zinc finger 81 105 - -
Gso12g0543 156 Pfam C2H2-type zinc finger 40 64 - -
Gso12g0543 156 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Gso12g0543 156 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Gso12g0543 156 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Gso12g0543 156 Gene3D Classic Zinc Finger 19 110 - -
Gso12g0543 156 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Gso12g0543 156 SMART c2h2final6 81 103 IPR013087 -
Gso12g0543 156 SMART c2h2final6 40 62 IPR013087 -
Gso12g0543 156 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 155 - -
Gso12g0543 156 SUPERFAMILY beta-beta-alpha zinc fingers 40 103 IPR036236 -
Gso12g0543 156 PANTHER ZINC FINGER PROTEIN ZAT5 1 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0543 Gso-Chr12 4860612 4861492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0543 1 147 C2H2 Transcription Factor Family AT2G28710 48.101 2.06e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso12g0543 zf-C2H2_6 2e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0543 - - gmx:100819852 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0543 12 4860612 4861492 Gso11g1205 11 10884145 10886074 GST
Gso15g0358 15 3208946 3209752 Gso12g0543 12 4860612 4861492 PCT
Gso11g3448 11 50417073 50417805 Gso12g0543 12 4860612 4861492 PCT
Gso12g0543 12 4860612 4861492 Gso15g0358 15 3208946 3209752 PCT
Gso12g0543 12 4860612 4861492 Gso11g3448 11 50417073 50417805 PCT