Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0542 ATGTCTTTGCAAAACAAGGGATTTTGGATGGTAAAGGGTTCTGGACAAATTAATGACAGAGAGACAATATTTGATAATCCTACCAAAGTTGAACCAAAACGACCTCATCAATGGTTTGTTGACGCTGCTGAAGTAGATTTTTTTCCAAACAAGAAACAAGCTGTAGAAGATGCAGATGAAAAATCTAGTCCTGGATTTTCAAATGTAAATATTCCTCCCTGGGAGAACAATCCCAATTTTCATTCGGTCCCAAACCAATTTATTGGCCGATTATTTGGGTCTGAAACCAGGCCTGTCAATTTCACTGAGAAGAATACTTCATATGTTTTGGCTGATGATTCTAATGTGAGATCAAAGATGATCACCAATCAATATGGAGATGATGCATCTTTTGGTTTGTCTATATCTCATTCTATTGAAGATTCTGAAGCATGTGTAAATTTTGGTGGAATAAAAAAAGTCAAAGTAAATCAGGTAAAGGAAGATGATATACAGGCTCTGGAGGGACATAATTTTGGTAGGCCAAATAATGGTAATCTACATCAGGCCTATAACAGGGAAGTTGAGACAAGGTCTGCATCAATAGGGCAAGCCTTTGACAGGGATGGTGATGCTTCTTTAATGGGACTTACCTACAGCAAAGGGGATGCACATGTCAGATCATTTAGTGCCCCCTTTGTCAAAGGTGATGACTCAATTGTATCAATTAGTGAGTCCTATAATAAAGAGGACACAAATATAATTTCTTTTGGTGGGTTCCCAGATGAAAGGGATATTATCTCTGTGGGTAGGCCTGCTGCAGAGTATGATCAATTATATAATCAATCTTCAGTTCATGGGTCAACAACAGCCCACGAGAAAGAGTTGGATGTGTCAAGTTCTGATGCAGTTGCAAGTACACTTCAGGTAGCAAAAGTTAAGTCTGAAACTGTATCCAAGAATAAACAAGAGCTCAAAACAGCAAAGAATGAAGCTCCAAACAGCTTCCCTTCTAATGTCAGAAGCTTGATATCTACTGGTATTCTTGATGGAGTTCCTGTAAAGTATATCTCAGTGTCACGAGAGGAACTTCGTGGAATTATAAAAGGCTCTGGCTATCTTTGTGGGTGCCAATCATGCAACTATACAAAGGTTCTGAATGCTTACGAGTTTGAGAGACATGCTGGCTGCAAAACAAAACATCCAAACAATCATATTTATTTTGAGAATGGGAAGACTATTTATCAAATAGTACAGGAATTGAGGAGTACCCCCGAAAGTTTGTTGTTTGATACAATTCAAACAGTTTTTGGTGCACCAATTCATCAAAAAGCATTTCGCAACTGGAAAGAATCATTTCAAGCAGCAACACGGGAGCTTCAACGCATTTATGGAAAGGAAGAACTTAACCTATAA 1395 0.3828 MSLQNKGFWMVKGSGQINDRETIFDNPTKVEPKRPHQWFVDAAEVDFFPNKKQAVEDADEKSSPGFSNVNIPPWENNPNFHSVPNQFIGRLFGSETRPVNFTEKNTSYVLADDSNVRSKMITNQYGDDASFGLSISHSIEDSEACVNFGGIKKVKVNQVKEDDIQALEGHNFGRPNNGNLHQAYNREVETRSASIGQAFDRDGDASLMGLTYSKGDAHVRSFSAPFVKGDDSIVSISESYNKEDTNIISFGGFPDERDIISVGRPAAEYDQLYNQSSVHGSTTAHEKELDVSSSDAVASTLQVAKVKSETVSKNKQELKTAKNEAPNSFPSNVRSLISTGILDGVPVKYISVSREELRGIIKGSGYLCGCQSCNYTKVLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESLLFDTIQTVFGAPIHQKAFRNWKESFQAATRELQRIYGKEELNL* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0542 464 Pfam Tify domain binding domain 359 414 IPR032308 -
Gso12g0542 464 PANTHER AUTOIMMUNE REGULATOR 1 464 - -
Gso12g0542 464 PANTHER DNA-BINDING PROTEIN 1 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0542 Gso-Chr12 4855399 4859397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0542 311 447 PHD Transcription Factor Family AT3G53680 52.174 8.90e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0542 - - gmx:100819317 940.258