Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0538 ATGTATGTGAAAACGGCTTGTGGTTTCACCCATAGCCTGCGGAAAATGCTTTATTGTGTTTCGGATATCAATTTAAAGTTCACAGTTATGCAAATAACCAGTGCATTAGTGAATGGCAGCGCTCTTCGTTTCCACTTACCTAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAGGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAACATGGTGAAATCATTGAAGTTAAAGTAATATGTGATCATGTGACTGGGAAATCAAGAGGTTATGGATTTGTGCGGTTCGTTTCTGAAACTACAGCTGCTGCAGCTCGCAAAGAAATGAATGGCCAGATACTGGATGGAAGACGCATTCGGGTGAGTTATGCACACAAAGGCGAGCGACTAAGTCTGCCAAACAATTCATAA 441 0.4195 MYVKTACGFTHSLRKMLYCVSDINLKFTVMQITSALVNGSALRFHLPRFLCVRHHSSTKLFVTGLSYDTNEPILRDAFGQHGEIIEVKVICDHVTGKSRGYGFVRFVSETTAAAARKEMNGQILDGRRIRVSYAHKGERLSLPNNS* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0538 146 SUPERFAMILY RNA-binding domain, RBD 55 138 IPR035979 GO:0003676
Gso12g0538 146 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 136 IPR000504 GO:0003723
Gso12g0538 146 PANTHER GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED 31 136 - -
Gso12g0538 146 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 130 IPR000504 GO:0003723
Gso12g0538 146 SMART rrm1_1 59 132 IPR000504 GO:0003723
Gso12g0538 146 Gene3D - 52 143 IPR012677 -
Gso12g0538 146 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 31 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0538 Gso-Chr12 4820399 4822702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0538 52 146 Eukaryotic Initiation Factors Gene Family AT4G34110 31.250 2.46e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0538 K13195 - gmx:100306540 296.975