Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0537 ATGTCTGCAGCCATGGATATGTCGCTCGACGACATAATCAAGAACAACAAAAAGTCTGGATCCGGAAGTTCACGTGGCCGGACCCGACCCTCCGGATCCGGACCTACTCGCCGGCTCCCCAACCGTGCCGCCAACCGCGCCGCACCTTATGCCACCGCTAAGGCGCCGGAGGCAACGTGGCAGCACGATTTATATGCAGATCAGCATGTGGCTGCGGCGGGGTACCCTGCTCAAGGTGGTCGTGCGGCTTCCATAGAAACTGGGACCAAGCTTTACATTTCAAACTTGGATTATGGTGTTTCCAATGATGATATTAAGGAATTGTTTGCTGAAGTGGGTGACTTGAAACGGCATGCGGTTCATTATGACAGGAGTGGCAGATCAAAGGGTACAGCAGAAGTAGTATTTTCACGACGAGCTGATGCTGTATCTGCTGTAAAGAGATACAACAACGTTCAATTAGATGGGAAACCAATGAAGATTGAAATTGTGGGAACAAACATTTCCACACCTGGTGTAGCTCCTGCTCCTAACGGAGCTATTGGAAATTTTAATGGAGTTCCTCGAAGTGGACAAGGAAGAGGTGGGGCATTAAGAAGGCCAGGAGGAAGAGGGCAAGGCATTCGAAGGGATCGGGGACGGGGAAGAGGTCGTGGTGGAGGAGGCCGTGGCGAAAAGGTATCTGCTGATGATCTTGATGCTGATTTGGAGAAGTATCATGCAGAGGCAATGCAATTGAACTGA 744 0.5067 MSAAMDMSLDDIIKNNKKSGSGSSRGRTRPSGSGPTRRLPNRAANRAAPYATAKAPEATWQHDLYADQHVAAAGYPAQGGRAASIETGTKLYISNLDYGVSNDDIKELFAEVGDLKRHAVHYDRSGRSKGTAEVVFSRRADAVSAVKRYNNVQLDGKPMKIEIVGTNISTPGVAPAPNGAIGNFNGVPRSGQGRGGALRRPGGRGQGIRRDRGRGRGRGGGGRGEKVSADDLDADLEKYHAEAMQLN* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0537 247 CDD RRM_THOC4 89 163 - -
Gso12g0537 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Gso12g0537 247 Gene3D - 72 229 IPR012677 -
Gso12g0537 247 SMART rrm1_1 90 162 IPR000504 GO:0003723
Gso12g0537 247 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 246 - -
Gso12g0537 247 MobiDBLite consensus disorder prediction 14 35 - -
Gso12g0537 247 SUPERFAMILY RNA-binding domain, RBD 82 195 IPR035979 GO:0003676
Gso12g0537 247 MobiDBLite consensus disorder prediction 204 233 - -
Gso12g0537 247 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 246 - -
Gso12g0537 247 Pfam C-terminal duplication domain of Friend of PRMT1 190 241 IPR025715 -
Gso12g0537 247 MobiDBLite consensus disorder prediction 186 233 - -
Gso12g0537 247 MobiDBLite consensus disorder prediction 1 54 - -
Gso12g0537 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Gso12g0537 247 Coils Coil 229 247 - -
Gso12g0537 247 SMART FoP_duplication_2 174 247 IPR025715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0537 Gso-Chr12 4812681 4816951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0537 88 163 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 1.08e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0537 K12881 - gmx:100775827 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0537 12 4812681 4816951 Gso11g1199 11 10821833 10826087 GST
Gso11g3454 11 50459037 50461925 Gso12g0537 12 4812681 4816951 PCT
Gso12g0537 12 4812681 4816951 Gso11g3454 11 50459037 50461925 PCT