LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso12g0526	ATGGAGGGCGAGAACGCGAGCAACAAGGTGATCGAGTTGGTGAACGAGATAGCCAGCATCTCCGATTACAGGCCTCCGGTGAAGAAGCAGTACTGCAACTTGGCGCGGAGGCTGAAGCTTCTGATCCCGATGTTCGAGGAGATTAGGGACATGAACAAAGACGCGCTTCCCGATAACACTTCCAACGCCGTCCTCGCCTTCAAGGAAGCTCTCGAATCCGCTATGGAACTCCTCAGATTCGGAAGCGAGGGCAGCAAGCTTTACTTGGTCCTTGAGCGGGACGAAATTATGAATAAATTCTACAAGGTGACAGCTCAGTTGGAACAGTCGTTGGGTGGTATTTCCTATGATAAACTTGATATATCAGATGAAGTTAAAGAGCAGGTTGAGTTGGTTCTTGCCCAGTTCAGAAGAGCTAAAGGGAGGGTTGATGAACCAGATGTCAGGTTGTATGAGGATATGTTGTCTGTTTACAACAACAGCAGTGATGCAGCTACAGATCCATCTGTTCTAAGTCAATTAGCTGAAAAGTTGAAATTGATGGGAATAGCTGATCTTACTCAAGAATCACTTGCTTTGCATGAGATGGTGGCATCAAGTGGTGGGGATCCAGGGGCACGCATTGAGAAAATGTCAATGTTATTGAAGAAGATAAAGGATTTCGTGCAAATAGAAAATCTAGTCAAGGATGATAATTTAGGAGGAAAAGGCATTTTCTCAAAAGTCTATGGACTTGGGACAAATGAAAAGAGTCATCAAGCTCCTGTTATCCCTGATGATTTTCGATGTCCGATTTCCCTGGAATTAATGAAGGACCCTGTCATTGTTTCAACGGGACAGACTTATGAGCGTACTTGTATTGAGAAGTGGTTGCAAGCAGGGCATGGAACCTGCCCCAAAACACAGCAGACTCTCACTAGTACTGTTCTCACGCCTAACTATGTATTGCGAAGCCTCATAGCACAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCTAGTGGTTCACAACCTAGTAAATCAGCATCAGCCTACTCACCCGCTGAGCAAAGTAAGATTGGAAGTCTTCTCCAAAAGCTCATATCTGTCAGTCCTGAAGACCAGAGATCAGCTGCAGGTGAGATCCGCCTTCTTGCAAAGCGCAATGCTGATAACCGCGTTGCCATTGCTGAAGCTGGTGCAATACCTCTCCTTGTCAGTCTCTTGTCTGTGCCTGACTCCCGCACTCAAGAACATGCTGTGACAGCGCTCCTGAATCTTTCCATATACGAAAATAACAAAGGAAGTATTGTTTCTTCAGGAGCAGTTCCAGGTATAGTTCATGTGCTGAAGAAGGGAAGCATGGAAGCTCGGGAAAATGCAGCTGCAACACTTTTCAGCCTTTCAGTTATAGATGAAAACAAGGTTACAATTGGGTCTTTAGGAGCCATACCACCACTGGTGACACTGCTAAGTGAGGGTAGCCAAAGGGGTAAGAAAGATGCTGCAACAGCACTCTTCAATTTGTGCATTTACCAGGGCAACAAGGGAAAGGCAGTGAGGGCTGGCGTTATTCCCACACTGATGCGACTACTGACCGAACCTAGCGGGGGAATGGTGGATGAAGCATTAGCTATTTTGGCAATATTGGCCAGCCATCCTGAAGGGAAGGTTACTATTAGAGCTTCAGAGGCAGTGCCAGTGTTAGTAGAGTTTATTGGGAATGGCTCCCCAAGGAACAAAGAGAATGCTGCTGCTGTTTTAGTTCACCTCTGTTCTGGAGATCAACAATATCTAGCACAGGCCCAAGAGCTGGGGGTGATGGGTCCACTGTTGGAATTGGCTCAAAATGGAACAGACAGAGGCAAAAGAAAGGCTGGACAATTGCTAGAGCGTATGAGCAGGCTAGTTGAGCAACAGCAGGAAGTTCCAACACAAACTGAAACTCAAGCTCAGAACGAGGATACCGAACCACCTTTGATTACTAACCCCGATGATTCCTAA	1989	0.4641	MEGENASNKVIELVNEIASISDYRPPVKKQYCNLARRLKLLIPMFEEIRDMNKDALPDNTSNAVLAFKEALESAMELLRFGSEGSKLYLVLERDEIMNKFYKVTAQLEQSLGGISYDKLDISDEVKEQVELVLAQFRRAKGRVDEPDVRLYEDMLSVYNNSSDAATDPSVLSQLAEKLKLMGIADLTQESLALHEMVASSGGDPGARIEKMSMLLKKIKDFVQIENLVKDDNLGGKGIFSKVYGLGTNEKSHQAPVIPDDFRCPISLELMKDPVIVSTGQTYERTCIEKWLQAGHGTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGIEPPKRPSGSQPSKSASAYSPAEQSKIGSLLQKLISVSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVSLLSVPDSRTQEHAVTALLNLSIYENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSLGAIPPLVTLLSEGSQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILASHPEGKVTIRASEAVPVLVEFIGNGSPRNKENAAAVLVHLCSGDQQYLAQAQELGVMGPLLELAQNGTDRGKRKAGQLLERMSRLVEQQQEVPTQTETQAQNEDTEPPLITNPDDS*	663

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso12g0526	662	SMART	arm_5	548	588	IPR000225	GO:0005515
Gso12g0526	662	SMART	arm_5	384	424	IPR000225	GO:0005515
Gso12g0526	662	SMART	arm_5	590	630	IPR000225	GO:0005515
Gso12g0526	662	SMART	arm_5	425	465	IPR000225	GO:0005515
Gso12g0526	662	SMART	arm_5	466	506	IPR000225	GO:0005515
Gso12g0526	662	SMART	arm_5	507	547	IPR000225	GO:0005515
Gso12g0526	662	MobiDBLite	consensus disorder prediction	631	662	-	-
Gso12g0526	662	Pfam	Neurochondrin	518	603	IPR008709	-
Gso12g0526	662	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	257	330	IPR013083	-
Gso12g0526	662	ProSiteProfiles	U-box domain profile.	256	330	IPR003613	GO:0004842\|GO:0016567

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso12g0526	Gso-Chr12	4706035	4710760	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso12g0526	1	662	U-box Gene Family	AT3G46510	69.415	0.0	902

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso12g0526	-		-	gmx:100815575	1261.9

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso12g0526	12	4706035	4710760	Gso11g1188	11	10691080	10695760	GST

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