Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0524 ATGGCAGATGGTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTGAAAGCTGGATTTGCTGGGGATGATGCTCCGAGGGCTGTGTTTCCCAGCATTGTTGGTCGTCCCCGTCACACGGGAGTGATGGTTGGCATGGGCCAAAAAGATGCATATGTTGGGGATGAAGCTCAGTCCAAGAGAGGTATATTAACTCTCAAATATCCCATTGAGCATGGTATTGTGAGTAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAACTCCGTGTCGCTCCTGAGGAGCACCCAGTTCTGCTAACCGAAGCACCTCTCAACCCAAAGGCTAATCGTGAGAAAATGACCCAAATTATGTTTGAGACCTTCAATACCCCTGCAATGTATGTTGCCATCCAGGCTGTTCTATCCTTGTATGCCAGTGGCCGTACAACTGGTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACGAGGGCTATGCTCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGACGTGATCTCACTGATGCCTTGATGAAAATCCTTACAGAACGTGGTTATTCCTTCACTACCACAGCTGAGCGTGAAATTGTAAGGGATGTAAAGGAAAAGCTGGCTTATATTGCCCTTGATTACGAGCAAGAGCTTGAAACATCAAAAACTAGCTCTGCTGTTGAGAAGAGCTATGAGTTGCCGGATGGACAGGTCATCACCATTGGTGCTGAGCGTTTCAGATGTCCTGAAGTTCTCTTCCAACCATCCATGATCGGAATGGAAGCTTCTGGCATTCATGAGACCACTTACAATTCAATCATGAAGTGTGATGTCGACATTAGGAAGGACTTGTATGGAAACATTGTTCTCAGTGGTGGATCTACCATGTTCCCAGGTATCGCTGACAGAATGAGCAAGGAAATCTCAGCTTTGGCCCCAAGCAGCATGAAGATTAAGGTGGTTGCTCCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTTCAATTGTACACAGGAAATGCTTCTGA 1134 0.4718 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEASGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDEAGPSIVHRKCF* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0524 377 PANTHER ACTIN 1 376 IPR004000 -
Gso12g0524 377 PANTHER ACTIN-97 1 376 - -
Gso12g0524 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Gso12g0524 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Gso12g0524 377 SMART actin_3 7 377 IPR004000 -
Gso12g0524 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Gso12g0524 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Gso12g0524 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Gso12g0524 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Gso12g0524 377 Gene3D - 140 340 - -
Gso12g0524 377 PRINTS Actin signature 28 37 IPR004000 -
Gso12g0524 377 PRINTS Actin signature 51 62 IPR004000 -
Gso12g0524 377 PRINTS Actin signature 63 85 IPR004000 -
Gso12g0524 377 PRINTS Actin signature 117 130 IPR004000 -
Gso12g0524 377 PRINTS Actin signature 142 161 IPR004000 -
Gso12g0524 377 PRINTS Actin signature 238 254 IPR004000 -
Gso12g0524 377 Pfam Actin 5 377 IPR004000 -
Gso12g0524 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Gso12g0524 377 Gene3D - 10 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0524 Gso-Chr12 4683116 4686583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0524 1 377 Cytoskeleton Gene Families AT3G12110 96.552 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0524 K10355 - gmx:100813437 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0524 12 4683116 4686583 Gso11g1186 11 10660278 10664028 GST
Gso15g0342 15 3068537 3071432 Gso12g0524 12 4683116 4686583 PCT
Gso11g3466 11 50588170 50590712 Gso12g0524 12 4683116 4686583 PCT
Gso12g0524 12 4683116 4686583 Gso15g0342 15 3068537 3071432 PCT
Gso12g0524 12 4683116 4686583 Gso11g3466 11 50588170 50590712 PCT