Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0520 ATGGGAATTTGTTTGAGCACCCAAATTGAAGCTGGGCTGAATTCAAAGCATGTGAGTGTCGATGCAAAAGATCTCAGCAGTCCAAGCAGTAAAATTACAAAAGATCTCAGCAATCCAATTAGCAATAAAATTACAGAAGATCTCAGCACACCAATTAGCAATAAAATTACAGAAGATCTCAGCACACCAATTAGCAATAAAATTACAGAAGATCTCAGCACACCAATTAGCAATAAAATTACAGAAGATCTCAGCACACCAATTAGTAAGGTCTCAGAGATCTTAGTGCCTCTGACTCCTCAGATTGAGGGTGAGATCTTGCAGTCATCCAATCTGAAGAACTTTAGTTTGACAGAACTAACAGCTGCCACAAGAAATTTCCGTAAAGACAGTGTGTTAGGAGGAGAAGGTGATTTTGGATCAGTTTTCAAGGGCTGGATTGATAACCACTCACTGGCTGCTGCAAAACCTGGCACGGGCGTTGTTGTTGCTGTGAAAAGACTTAGTTTGGATAGCTTCCAAGGTCACAAGGATCGGTTGGCTGAAGTGAACTATCTAGGCCAGCTTTCTCATCCTCATCTAGTGAAATTAATTGGGTATTGCTTTGAAGATAAAGACCGACTTCTGGTCTATGAATTTATGCCTCGTGGTAGCTTGGAGAATCACTTGTTCATGAGAGGGTCATACTTTCAACCTCTTTCTTGGGGTCTACGTTTGAAAGTTGCTCTAGGCGCTGCCAAAGGGCTTGCATTTCTTCACAGTGCTGAAACAAAAGTGATATACCGAGATTTCAAGACCTCAAATGTCTTGCTGGATTCAAATTATAATGCAAAGCTTGCTGATTTGGGGCTGGCAAAGGACGGACCAACACGTGAGAAAAGTCATGCCTCCACCAGGGTAATGGGAACCTATGGATATGCAGCTCCTGAATATCTAGCCACAGGTAATCTGAGTGCTAAGAGTGATGTCTTCAGTTTTGGAGTAGTCCTGCTGGAAATGTTATCTGGCAGGAGGGCTGTGGACAAGAATAGACCATCAGGACAACACAATTTGGTGGAATGGGCCAAACCATACTTATCCAACAAACGCAAACTTTTGCGTGTGTTGGATAATCGTCTTGAAGGCCAATATGAATTAGATGAGGCATGTAAGGTAGCTACCCTCTCTCTGCGATGCCTTGCAATAGAATCAAAGTTGAGACCAACCATGGACGAGGTTGCCACGGATTTGGAGCAGCTCCAGGTCCCCCATGTGAAACAAAATCGTAGAAAAAGTGCTGATCATTTTACCCATGGTAGAATTGCCACTGCTTCTGCTTCCCCGCTCTCACGTGACATTGCAAATACACATCCTTGA 1356 0.4322 MGICLSTQIEAGLNSKHVSVDAKDLSSPSSKITKDLSNPISNKITEDLSTPISNKITEDLSTPISNKITEDLSTPISNKITEDLSTPISKVSEILVPLTPQIEGEILQSSNLKNFSLTELTAATRNFRKDSVLGGEGDFGSVFKGWIDNHSLAAAKPGTGVVVAVKRLSLDSFQGHKDRLAEVNYLGQLSHPHLVKLIGYCFEDKDRLLVYEFMPRGSLENHLFMRGSYFQPLSWGLRLKVALGAAKGLAFLHSAETKVIYRDFKTSNVLLDSNYNAKLADLGLAKDGPTREKSHASTRVMGTYGYAAPEYLATGNLSAKSDVFSFGVVLLEMLSGRRAVDKNRPSGQHNLVEWAKPYLSNKRKLLRVLDNRLEGQYELDEACKVATLSLRCLAIESKLRPTMDEVATDLEQLQVPHVKQNRRKSADHFTHGRIATASASPLSRDIANTHP* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0520 451 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 82 428 - -
Gso12g0520 451 CDD STKc_IRAK 135 413 - -
Gso12g0520 451 ProSiteProfiles Protein kinase domain profile. 128 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0520 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Gso12g0520 451 Gene3D Transferase(Phosphotransferase) domain 1 214 435 - -
Gso12g0520 451 PANTHER OS01G0588500 PROTEIN-RELATED 82 428 - -
Gso12g0520 451 SUPERFAMILY Protein kinase-like (PK-like) 105 410 IPR011009 -
Gso12g0520 451 Pfam Protein tyrosine and serine/threonine kinase 135 410 IPR001245 GO:0004672|GO:0006468
Gso12g0520 451 Gene3D Phosphorylase Kinase; domain 1 103 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0520 Gso-Chr12 4644824 4648457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0520 105 410 Glycoside Hydrolase AT3G07070 48.065 3.80e-93 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso12g0520 PK_Tyr_Ser-Thr 2.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0520 - - gmx:100812366 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0520 12 4644824 4648457 Gso11g1181 11 10622478 10626055 GST
Gso15g0336 15 3018723 3021733 Gso12g0520 12 4644824 4648457 PCT
Gso11g3473 11 50638615 50641692 Gso12g0520 12 4644824 4648457 PCT
Gso12g0520 12 4644824 4648457 Gso15g0336 15 3018723 3021733 PCT
Gso12g0520 12 4644824 4648457 Gso11g3473 11 50638615 50641692 PCT