Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0519 ATGAAGTGTTTCTATTTCTCAAACGGAGGAGAAGACGAGGATTCCGTGGCGGGAGCGGCGCCGCCGAGTTCGCGCGGCGGCGGCTCCACCTCGCGGGTGTCGTGGGCGCGTTCGCTGAGCCTCATGGACACGCGCAGCACCAGCCGCTCCCACTTCGACTCCGAATCAACGGAGTTCTCCGACACGGTGGACTTCCACCACTTCCTGGCGCAGCGCCGCGCCAACCACCTCCGCCTCTTCTCTTTCTCCGACCTAAAATCCGCCACGCGCGCCTTCAGCCGCGCCCTCCTCGTCGGCGAGGGAGGGTTCGGCTCCGTCTACCGCGGCCTCCTCGACCAAAACGACGTCGCGATCAAGCAGCTGAACCGCAACGGCCACCAAGGGCACAAGGAGTGGATCAACGAGTTGAACCTGTTAGGTGTCGTGAAGCACCCTAATTTGGTGAAATTGGTTGGGTACTGTGCCGAAGACGATGAGAGAGGGATTCAGAGGCTTTTGGTTTACGAGTTTATGCCGAATAAGAGCTTGGAGGATCATCTCCTTGCAAGAGTACCGTCGACGATAATCCCTTGGGGGACCAGGTTGAGGATTGCGCGGGATGCGGCGAGGGGTTTGGCGTATCTTCACGAGGAAATGGATTTTCAGCTAATATTTCGGGATTTTAAGACATCCAACATCTTGCTGGATGAGAATTTCAATGCAAAGCTTTCTGATTTTGGGCTGGCTAGGCAAGGACCCTCAGAAGGGTCTGGCTATGTTTCAACAGCAGTTGTCGGCACCATAGGTTATGTTGCGCCGGAGTATGTTCTGACTGGTAAGCTAACTGCTAAGAGTGATGTGTGGAGCTTTGGTGTAGTTCTTTATGAGCTTATCACTGGGAGGAGAGTTGTAGAGAGAAACCTACCAAGAAATGAGCAAAAGCTTTTGGATTGGGTAAGACCTTATGTTTCTGATCCTAGAAAGTTCCATCATATATTAGACCCCCGGCTTAAGGGACAATACTGCATCAAATCAGCTCATAAACTTGCAATCCTAGCAAACAAGTGCCTCATGAAGCAGCCGAAATCCCGTCCAAAAATGAGCGAGGTGGTTGAGTCTCTTGGAAGCATTATTAATGACACAGTTCCTCATGATGAACACATCCCCCAAGCTGCTGTAGCAGCAACTGGAGAAGAAAAAGAAGAAAAGTTATCTGTAGAGGACACTCAACCTGAACCTGCAGCTAAACAAGGGAACAATTACCTGAAGAAGGTTTTTGAATTGAAAGACGTGGTCAGCTTAAGAAACAAGTCCGTTGGAAGGTTGGATTGGAAAAGTTGGGCACCTGGGCTAGTAAGAACTTGGTGA 1347 0.5115 MKCFYFSNGGEDEDSVAGAAPPSSRGGGSTSRVSWARSLSLMDTRSTSRSHFDSESTEFSDTVDFHHFLAQRRANHLRLFSFSDLKSATRAFSRALLVGEGGFGSVYRGLLDQNDVAIKQLNRNGHQGHKEWINELNLLGVVKHPNLVKLVGYCAEDDERGIQRLLVYEFMPNKSLEDHLLARVPSTIIPWGTRLRIARDAARGLAYLHEEMDFQLIFRDFKTSNILLDENFNAKLSDFGLARQGPSEGSGYVSTAVVGTIGYVAPEYVLTGKLTAKSDVWSFGVVLYELITGRRVVERNLPRNEQKLLDWVRPYVSDPRKFHHILDPRLKGQYCIKSAHKLAILANKCLMKQPKSRPKMSEVVESLGSIINDTVPHDEHIPQAAVAATGEEKEEKLSVEDTQPEPAAKQGNNYLKKVFELKDVVSLRNKSVGRLDWKSWAPGLVRTW* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0519 448 CDD STKc_IRAK 98 370 - -
Gso12g0519 448 Gene3D Transferase(Phosphotransferase) domain 1 171 388 - -
Gso12g0519 448 SUPERFAMILY Protein kinase-like (PK-like) 74 367 IPR011009 -
Gso12g0519 448 PANTHER OS01G0588500 PROTEIN-RELATED 36 397 - -
Gso12g0519 448 MobiDBLite consensus disorder prediction 1 31 - -
Gso12g0519 448 ProSiteProfiles Protein kinase domain profile. 92 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0519 448 Gene3D Phosphorylase Kinase; domain 1 72 170 - -
Gso12g0519 448 MobiDBLite consensus disorder prediction 389 409 - -
Gso12g0519 448 Pfam Protein kinase domain 97 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0519 448 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 36 397 - -
Gso12g0519 448 ProSitePatterns Protein kinases ATP-binding region signature. 98 119 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0519 Gso-Chr12 4641439 4643801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0519 78 402 Glycoside Hydrolase AT3G07070 48.048 6.54e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso12g0519 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0519 - - gmx:100811825 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0519 12 4641439 4643801 Gso11g1180 11 10617123 10620063 GST