Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0518 ATGGCTGTGGCCAACAATGTGCTTTGCATTTTCTTCATTATCTCCTTAACATGTATGGTTCAAGCTCGAATCCCAGGGGTTTACTCTGCTGGTGCATGGCAAAGTGCCCACGCCACCTTCTACGGAGGCTCCGATGCTTCCGGCACCATGGGGGGAGCGTGTGGGTATGGAAACCTGTACAGCCAGGGTTATGGTGTGAACACGGCGGCATTGAGCACGGCGCTCTTCAACAGCGGGCTTAGCTGCGGTGCGTGTTTTGAGATAAAGTGCGCAAACGACAGGCAGTGGTGCCACTCCGGCAGTCCTTCCATCTTCATCACCGCCACCAACTTTTGCCCTCCCAACTTCGCTCTTCCTAACGACAATGGCGGCTGGTGCAACCCTCCTCGCCCTCACTTCGACCTCGCCATGCCCATGTTCCTTAAAATCGCCGAATACCGCGCCGGAATCGTCCCCGTTGCCTATCGCCGGGTGCCATGCAGAAAGCACGGAGGGATAAGGTTCACGATAAACGGATTCCGTTACTTCAACCTGGTGCTGATTAGCAACGTAGCGGGTGCGGGTGATATCGTGCGCACGTACGTGAAGGGCACCCGAACCGGGTGGATGCCAATGAGCCGTAACTGGGGTCAGAACTGGCAGTCAAACGCGGTTTTGGTGGGCCAGGCCCTGTCCTTCCGTGTCACCGGCAGCGACCGCCGCACCTCAACCTCGTGGAACATCGCTCCACCCAATTGGCAATTCGGTCAAACTTTCACCGGAAAGAATTTCCGTGTCTGA 780 0.5654 MAVANNVLCIFFIISLTCMVQARIPGVYSAGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDRQWCHSGSPSIFITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKHGGIRFTINGFRYFNLVLISNVAGAGDIVRTYVKGTRTGWMPMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIAPPNWQFGQTFTGKNFRV* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0518 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Gso12g0518 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Gso12g0518 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Gso12g0518 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Gso12g0518 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Gso12g0518 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Gso12g0518 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Gso12g0518 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Gso12g0518 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Gso12g0518 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Gso12g0518 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Gso12g0518 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Gso12g0518 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Gso12g0518 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Gso12g0518 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Gso12g0518 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Gso12g0518 259 Gene3D - 165 257 IPR036749 -
Gso12g0518 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Gso12g0518 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Gso12g0518 259 Gene3D - 19 161 IPR036908 -
Gso12g0518 259 SMART dpbb_1 68 155 IPR007112 -
Gso12g0518 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Gso12g0518 259 PANTHER EXPANSIN-A15 5 258 IPR002963 GO:0009664
Gso12g0518 259 PANTHER EXPANSIN 5 258 - -
Gso12g0518 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Gso12g0518 259 Pfam Lytic transglycolase 68 155 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0518 Gso-Chr12 4628895 4631453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0518 1 259 Expansin Gene Family AT2G39700 83.012 1.57e-162 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0518 - - gmx:100811296 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0518 12 4628895 4631453 Gso11g1179 11 10605687 10608145 GST
Gso15g0333 15 2996939 2998468 Gso12g0518 12 4628895 4631453 PCT
Gso11g3476 11 50660365 50661691 Gso12g0518 12 4628895 4631453 PCT
Gso12g0518 12 4628895 4631453 Gso15g0333 15 2996939 2998468 PCT
Gso12g0518 12 4628895 4631453 Gso11g3476 11 50660365 50661691 PCT