Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0513 ATGGATCCTCATATCAAGTCCAATTTCATCAATGGCGTTAAACCCAGCCAAGTGCCCAACACGGTCGATGCAGAGGATCACTTCTTTGACCCTGTTAATGGGATGATGAAACCCTTTGATTTTCGACTCATGGATAACCCATTTCTTATTCCGCCTGATCCAAATGCTGCTCAAAATCCTTTTTCCTTGTCCAATGATGAAGACTCTCCAGTGGATGAGATTGATTTTTCTGCCACTGTCCTACGCTACATAAACCAAATGCTTATGGAAGAGGACTTGGAGGCAAAGCCGTGTATGTTCCATGATTCCTTGGCTCTCCAAGCTGCTGAGAAATCATTCTATGAGGTCATTGGTGAGACATACCCTTCTTCTTCTTCTTCTTCTTCCATCCAAAACTATCACAACGTGGACAGCCCTGATGAAAGTAGCTTCAGTGGTACAACGACTAGCACCGGTAACTCGTTTGGGTCGCAATGGAATAACGTCGATCTTGCTGACTACAAGCCTTCCATACTGCAAACCACTTTTCCTACTGACTTTGTTTTCCAGGCCAGTTCAATCCAATCTTCAATGAACACCACGAGCAAATTTGCCGTAACCAATAGTGAATTCTTGGCTAGTTCCGCGGCTGGATTTTTGGGTCCAGGTTCAACAAACTTGTTTAGCAAGAGTGAGTCTGTACTGCAATTTGAGAGGGGTGTGGAGGAAGCCAATAAGTTCCTGCCTAAAGGGAATCCTTTGGTTATTGACTTGGAGAACCCATCTTTTAGAATGGTTCCTCTTCAGCAGGAGGAAATTAAGGCGGAGAGGGATATAGATGAAATTTCTGCTGAGTCAAGAGGAAGGAAGAATCACGAGCGGGAAGATGAAGAAACAGATTTACAAGATGGGAGAAGCAACAAGCAGTCAGCTGTGTACATTGATGACAGTGAGATATCAGAATTGCTTGATAAGGTCCTGCTAGGCACGGGGTGCAGAAATGAACCAGCTCCTTCGTGTATTGGTTACACAGACCTTCCCAGTGGACCATCCTTGGGTAAATTAGAAGAAACAAACAAGTCTGGTGGTGGGAAGAGCCGTGTTAAGAAACAAGGCAACAAGAAGGGAGTTGTGGATCTGAGGACATTGTTGATTCTATGCGCACAAGCTGTTTCTTCAGATGATCATGTATCTGCTAATGAGTTATTGAAGCAGATAAAGCAACATGCTTCTCCACTAGGTGATGGAACTCAGAGGCTGGCCCATTGCTTTGCAAATGCCCTTGAAGCACGCTTGGCTGGCACCGGCACTCAGATTTATACTGCTTTATCTCACAAAAGAACCTCTGCAGCGGACATGGTGAAAGCTTACCAAATGTATATTTCTGCCTGTCCATTCAAGAAGCTTTCGATGATTTTTGCAAACCATACAATTTTGCAGCTAGCCAAGGAAGTTGAAACTCTTCATATTATAGATTTTGGCATCCGTTATGGCTTCCAGTGGCCAGCTTTTATTTATCGTTTATCAAAACAACCTGGTGGGCCTCCCAAGCTGCGTATTACAGGGATAGAGCTCCCACAACCTGGTTTCAGGCCAGCAGAGAGAGTCCAAGAGACAGGGCTTCGACTTGCAAGGTATTGTGATCGCTTTAATGTTCCATTTGAGTTCAATGCCATTGCACAGAAATGGGAAACCATCAAAATTGAGGACTTGAAGATAAAGGAAAATGAACTTCTTGTTGCGAATGCTATGTTTCGATTTCAAAATCTACTTGATGAGACAGTTGTGGTGAATAGTCCCCGAGATGCTGTTTTAAAGTTAATAAGGAAAGCAAATCCTGCAATCTTTTTACATGCTACTGTCAATGGGAGCTATAATGCTCCATTCTTTGTGACACGGTTCCGGGAGGCCCTTTTTCATTATTCTACTTTGTTTGATGTGCTTGATACCAATGTTGCTCGGGAAGATCCAATGAGGTTGATGTTTGAGAGAGAGTTCTTTGGGCGGCAGGTAATGAATATTGTAGCTTGTGAGGGTAGTGAGAGGGTTGAGAGGCCTGAGACATACAAGCAATGGCAGGTTAGGAACATGAGGGCTGGATTTAAGCAATTGCCCTTGGATAAACATCTCATTAACAAATTAAGATGCAAGTTGAAAGGTGTGTACCACAGTGATTTCATGCTTCTTGAAGATGGCAATTACATGCTGCAAGGTTGGAAGGGCCGAGTAGTTTATGCTTCCTCCTGTTGGGTGCCTGCATAG 2241 0.4378 MDPHIKSNFINGVKPSQVPNTVDAEDHFFDPVNGMMKPFDFRLMDNPFLIPPDPNAAQNPFSLSNDEDSPVDEIDFSATVLRYINQMLMEEDLEAKPCMFHDSLALQAAEKSFYEVIGETYPSSSSSSSIQNYHNVDSPDESSFSGTTTSTGNSFGSQWNNVDLADYKPSILQTTFPTDFVFQASSIQSSMNTTSKFAVTNSEFLASSAAGFLGPGSTNLFSKSESVLQFERGVEEANKFLPKGNPLVIDLENPSFRMVPLQQEEIKAERDIDEISAESRGRKNHEREDEETDLQDGRSNKQSAVYIDDSEISELLDKVLLGTGCRNEPAPSCIGYTDLPSGPSLGKLEETNKSGGGKSRVKKQGNKKGVVDLRTLLILCAQAVSSDDHVSANELLKQIKQHASPLGDGTQRLAHCFANALEARLAGTGTQIYTALSHKRTSAADMVKAYQMYISACPFKKLSMIFANHTILQLAKEVETLHIIDFGIRYGFQWPAFIYRLSKQPGGPPKLRITGIELPQPGFRPAERVQETGLRLARYCDRFNVPFEFNAIAQKWETIKIEDLKIKENELLVANAMFRFQNLLDETVVVNSPRDAVLKLIRKANPAIFLHATVNGSYNAPFFVTRFREALFHYSTLFDVLDTNVAREDPMRLMFEREFFGRQVMNIVACEGSERVERPETYKQWQVRNMRAGFKQLPLDKHLINKLRCKLKGVYHSDFMLLEDGNYMLQGWKGRVVYASSCWVPA* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0513 746 ProSiteProfiles GRAS family profile. 364 744 IPR005202 -
Gso12g0513 746 MobiDBLite consensus disorder prediction 336 365 - -
Gso12g0513 746 MobiDBLite consensus disorder prediction 122 152 - -
Gso12g0513 746 Pfam GRAS domain family 373 743 IPR005202 -
Gso12g0513 746 MobiDBLite consensus disorder prediction 267 303 - -
Gso12g0513 746 MobiDBLite consensus disorder prediction 267 297 - -
Gso12g0513 746 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 48 745 IPR005202 -
Gso12g0513 746 PANTHER SCARECROW-LIKE PROTEIN 14 48 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0513 Gso-Chr12 4585233 4588478 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0513 80 746 GRAS Transcription Factor Family AT1G07530 55.492 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso12g0513 GRAS 7.3e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0513 - - gmx:100815586 1481.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0513 12 4585233 4588478 Gso11g1175 11 10554484 10557978 GST
Gso15g0328 15 2958002 2960413 Gso12g0513 12 4585233 4588478 PCT
Gso11g3481 11 50693637 50696229 Gso12g0513 12 4585233 4588478 PCT