Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0502 ATGAGCAGCTTCTTAATCTGTATCTGGCATGCTTATTTGGCAATTATTTTGATATTCATGATATTAAACTCCCCTCAGTTGTTACATCATTTTTTGCTCTGGGTTGTACTGGCTATCTTTGTGATGGCTACAAGTCTGAGGATGTATGCAACTTGTCAACAGCTTCAAGCACAGGCCAGGGCTCATGCTGCAGCAGCCTCTGGGTTGCTTGGCCATGATGAACTTCGTCGTCACATGCCACCATCTATTGCAATTGCAACCAGAGGAAGATTGCAGGGACTTAGACTTCAGCTTGCACTTCTTGACCGTGAATTTGATGAGCTAGATTATGACACTTTGAGAGCTCTGGATTCTGATACTGCTTCTAGTACTCGTTCAATGACCGAGGAAGAGATAAATGCCTTGCCTATTCACACTTACAAAGTTCCAGTCCCACCAAAAGATGGTTCAGCTGGTTTGGCATCCTCTTCAGATGCAGCTGAGGTTAAACAAGAATCTGGAGGAACAGAGGCAGGTACCGGAGGTCCAGAAGATGAGCTGACATGTACTATATGCTTGGACCAAGTTAAGAGGGGGGAGCTTGTTCGAAGCTTACCATGCTTGCATCAGTTTCATGCAAACTGCATTGATCCATGGCTCCGACAACAAGGAACATGTCCTGTGTGCAAATTAAGGATAGGGTCGGTAAGTGGAGGAAACAGGGAGAGCGAGTCCGATGGTTCAGATATTGCATAA 735 0.4531 MSSFLICIWHAYLAIILIFMILNSPQLLHHFLLWVVLAIFVMATSLRMYATCQQLQAQARAHAAAASGLLGHDELRRHMPPSIAIATRGRLQGLRLQLALLDREFDELDYDTLRALDSDTASSTRSMTEEEINALPIHTYKVPVPPKDGSAGLASSSDAAEVKQESGGTEAGTGGPEDELTCTICLDQVKRGELVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRIGSVSGGNRESESDGSDIA* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0502 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 229 IPR013083 -
Gso12g0502 244 MobiDBLite consensus disorder prediction 137 177 - -
Gso12g0502 244 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 13 243 - -
Gso12g0502 244 CDD RING-H2_PA-TM-RING 181 223 - -
Gso12g0502 244 Pfam Ring finger domain 181 223 IPR001841 -
Gso12g0502 244 PANTHER TARGET OF ERK KINASE MPK-1 13 243 - -
Gso12g0502 244 ProSiteProfiles Zinc finger RING-type profile. 182 223 IPR001841 -
Gso12g0502 244 SMART ring_2 182 222 IPR001841 -
Gso12g0502 244 SUPERFAMILY RING/U-box 177 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0502 Gso-Chr12 4462480 4468429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0502 13 244 C3H Transcription Factor Family AT3G55530 64.957 1.12e-94 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0502 K16283 - gmx:100805406 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0502 12 4462480 4468429 Gso11g1166 11 10462767 10467574 GST