Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0501 ATGAATTTGGATACGCAACCCGGAACGCCGTCGTATTGGTGCTACAGCTGCACCCGTTTCGTGCACCTCTCTGTCCAAGCCACCATCGCCTGCCCCCACTGTCAAAGCGGTTTCGTCGAAGAGATCCGCGCCGGCGCCGAAGCCTCGCCACGCCACCGTCTAAGTCCTTTCCCTGACGATCCCCTTTCTTTCCGGCGACAGGGCTTCCGCCGCCGTAGGAGAGAAGGTGCCGGCAACCGCTCCCCGTTCAACCCCGTCATCGTCCTCCGCGGCCCCGGCGACGACTCCGCCGCCGCCGATCACGACGGTGCCAGCACGTTCGAGCTCTTCTACGACGACGGCGATGGCACCGGCCTCCGCCCCCTCCCTCCCACCATGTCGGAGTTCCTCCTCGGCTCCGGCTTCGACCGGTTACTGGAACAGTTTGCGCAGATGGAGATGAACGGCTTCGGCCGGCCGGAGAATCCGCCGACGTCCAAGGCGGCGATCGAGTCCATGCCGACGGTCGAGATCGGCGAAACTCACGTCGAAACCGACGCGCACTGCGCCGTGTGCAAAGAAGTGTTTGAGCTCCACGCGGAGGCGCGTGAGTTGCCGTGCAAGCACATCTACCACTCCGAGTGCATCCTCCCGTGGCTCTCGATGCGGAACTCGTGCCCGGTGTGCCGCCACGAGCTTCCTTCCGATTTGGAAACTAGAGTTCCGAGCCAGATCGACGAGGAAGCGATAGGATTAACGATTTGGAGGCTTCCAGGAGGCGGATTCGCCGTAGGGCGATTCTCCGGCGGCCGGAGAACCGGGGAGAGTCATTTGCCGGTGGTGTACACGGAGATGGACGGTGGACTTAACACAAATGGTGGTGCTCCTAGGAGAATTTCTCGTTCTGTTAGAAGCAATAGGGTTAGGGAAAGTCGAGGGTTTGGTAGAGTTTTTCGCAATTTCTTTTCATTCTTTGGAAGAATTGGTTCTAGAAACTCTTCTTCTTCTTCTGAACATGGGTCTGTGAGTAGAAGCCGTAGTCACGTGAGTTCAATGTTCAATAGAAGCTCGCGGAGACATAGCAGGACTTGGGTTATGGATGATTGA 1086 0.5856 MNLDTQPGTPSYWCYSCTRFVHLSVQATIACPHCQSGFVEEIRAGAEASPRHRLSPFPDDPLSFRRQGFRRRRREGAGNRSPFNPVIVLRGPGDDSAAADHDGASTFELFYDDGDGTGLRPLPPTMSEFLLGSGFDRLLEQFAQMEMNGFGRPENPPTSKAAIESMPTVEIGETHVETDAHCAVCKEVFELHAEARELPCKHIYHSECILPWLSMRNSCPVCRHELPSDLETRVPSQIDEEAIGLTIWRLPGGGFAVGRFSGGRRTGESHLPVVYTEMDGGLNTNGGAPRRISRSVRSNRVRESRGFGRVFRNFFSFFGRIGSRNSSSSSEHGSVSRSRSHVSSMFNRSSRRHSRTWVMDD* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0501 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 8 308 - -
Gso12g0501 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 308 - -
Gso12g0501 361 Pfam Ring finger domain 181 223 IPR001841 -
Gso12g0501 361 Pfam Protein of unknown function (DUF1117) 243 351 IPR010543 -
Gso12g0501 361 SMART ring_2 182 222 IPR001841 -
Gso12g0501 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 229 IPR013083 -
Gso12g0501 361 SUPERFAMILY RING/U-box 162 230 - -
Gso12g0501 361 CDD RING-H2_RNF126_like 182 223 - -
Gso12g0501 361 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Gso12g0501 361 MobiDBLite consensus disorder prediction 323 347 - -
Gso12g0501 361 ProSiteProfiles Zinc finger RING-type profile. 182 223 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0501 Gso-Chr12 4455408 4456932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0501 121 229 C3H Transcription Factor Family AT5G01980 46.789 1.98e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0501 - - gmx:100792874 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0501 12 4455408 4456932 Gso11g1165 11 10455234 10456717 GST
Gso15g0321 15 2886563 2888141 Gso12g0501 12 4455408 4456932 PCT
Gso11g3486 11 50766906 50768339 Gso12g0501 12 4455408 4456932 PCT
Gso12g0501 12 4455408 4456932 Gso15g0321 15 2886563 2888141 PCT
Gso12g0501 12 4455408 4456932 Gso11g3486 11 50766906 50768339 PCT