Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0497 ATGGGGGAAGAGGTGAAGACGAGCGAGTACGACGAAGAGCGCGTGATGGAGTGGGAGATGGGTCTCCCAACCGCCAACGATCTCACGCCTCTCTCCCAGCCGCTGATCCCGCCGGAGCTCGCTTCGGCCTTCAGCATCTCGCCGGAGCCCCACCGCACCCTCCTCGAGGTCAACCGCGCCTCGCGCAACACGCTCTCCACAATCCGCGGCGGCGGTAGCGTGCACCAGGCCTTCTCCTCCAACAACAACAACAACCACCACTACGACGGCGACGGAGACGTCGGCGACGAGGAGGAGTACGACGACGCCGATCGCGACGGCTCGGGGTCAGATTCCCGGAAGCAGCGGAAGATCGACTGCGGCGTGGCGGAGGAGGCGGACTCGGCGGTGAGGACGGAGACCTCGGCGGAGCGAACGGCGGTGAAGCGGCCGCGGCTGGTGTGGACCCCGCAGCTTCACAAGAGATTCGTGGACGTGGTGGCGCACCTCGGGATCAAGAACGCGGTGCCGAAGACGATTATGCAATTGATGAACGTGGAAGGGTTGACCCGCGAGAATGTCGCGAGCCATCTCCAGAAGTATCGTCTCTACCTGAAACGGATGCAGGGCCTTTCGAACGAGGGCCCTTCTTCTTCGGATCAGTTATTCGCTTCCACAGCTGTGCCTCAGAGTTTGCATGACTCTGCTCCTCCCAGTGCCCATAGCAATGGCCATGGTCATCTCCCTGTTCCCATGATGTCCATGCCATATCCCCCTCCCATGATGTCCATGCCATACCCCCCTCCCATGATGTCCGGCATGCCCCATGCCCATGGCCACATGGGCATCCCCATGCCTAATTCCTCCGCCACCTCAGCTTACCATCCTTATAACATGTTGCATCAAAGGGATTGGCCTCACCTTGCTCCTAATGATAAATGA 921 0.6069 MGEEVKTSEYDEERVMEWEMGLPTANDLTPLSQPLIPPELASAFSISPEPHRTLLEVNRASRNTLSTIRGGGSVHQAFSSNNNNNHHYDGDGDVGDEEEYDDADRDGSGSDSRKQRKIDCGVAEEADSAVRTETSAERTAVKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDQLFASTAVPQSLHDSAPPSAHSNGHGHLPVPMMSMPYPPPMMSMPYPPPMMSGMPHAHGHMGIPMPNSSATSAYHPYNMLHQRDWPHLAPNDK* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0497 306 Gene3D - 139 202 - -
Gso12g0497 306 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 298 IPR044841 GO:0003700|GO:0006355
Gso12g0497 306 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 144 196 IPR006447 GO:0003677
Gso12g0497 306 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 298 - -
Gso12g0497 306 MobiDBLite consensus disorder prediction 66 88 - -
Gso12g0497 306 MobiDBLite consensus disorder prediction 66 120 - -
Gso12g0497 306 MobiDBLite consensus disorder prediction 106 120 - -
Gso12g0497 306 Pfam Myb-like DNA-binding domain 147 195 IPR001005 -
Gso12g0497 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 199 IPR017930 -
Gso12g0497 306 SUPERFAMILY Homeodomain-like 141 200 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0497 Gso-Chr12 4399388 4402150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0497 1 227 G2-like Transcription Factor Family AT3G46640 60.408 3.02e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso12g0497 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0497 - - gmx:100816634 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0497 12 4399388 4402150 Gso11g1159 11 10381605 10384494 GST