Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0491 ATGGAATCTGATCATCATCATGAAGCAGCATCAGACAATCATCCCTCTGATGGAGAGGAGCAAGGTGCAAGTCACGTGACATCTAGGTCCTACGAGTGCAACTTCTGCCGGAGGGGCTTCTCTAATGCACAAGCACTAGGGGGACACATGAACATCCACAGAAAAGACAAAGCCAAGCTCAAGCAACAACAATCTTCAAACCAAATTCAACAGGATCCGGCCAAGTCTGGTGGTGAAGAGAGTAACAAACCAAACTGGAATTGGAATGTGTCTCCACAAGAACATGTCATTCACAAGAGGCATCAGCTTCCACTCTTTGCCGAAACACCAACTAGCAGTGAAACACAAAAGCCACAAGGTCAAACTCAAACTACTACTGAACAAACTTTGTTATCTACTCATCAAGATTCCTCATCGGAGTTAGACCTTGAACTGAGACTAGGACCTGAACCACAGGATTCATCAGCAGAAACGGATACAAGAAATTTTTTTTGA 495 0.4424 MESDHHHEAASDNHPSDGEEQGASHVTSRSYECNFCRRGFSNAQALGGHMNIHRKDKAKLKQQQSSNQIQQDPAKSGGEESNKPNWNWNVSPQEHVIHKRHQLPLFAETPTSSETQKPQGQTQTTTEQTLLSTHQDSSSELDLELRLGPEPQDSSAETDTRNFF* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0491 164 ProSitePatterns Zinc finger C2H2 type domain signature. 33 53 IPR013087 -
Gso12g0491 164 MobiDBLite consensus disorder prediction 1 19 - -
Gso12g0491 164 Gene3D Classic Zinc Finger 16 86 - -
Gso12g0491 164 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 111 - -
Gso12g0491 164 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 111 156 - -
Gso12g0491 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 31 58 IPR013087 -
Gso12g0491 164 MobiDBLite consensus disorder prediction 106 138 - -
Gso12g0491 164 MobiDBLite consensus disorder prediction 47 164 - -
Gso12g0491 164 PANTHER OS07G0101800 PROTEIN 1 111 - -
Gso12g0491 164 PANTHER OS07G0101800 PROTEIN 111 156 - -
Gso12g0491 164 SUPERFAMILY beta-beta-alpha zinc fingers 28 58 IPR036236 -
Gso12g0491 164 MobiDBLite consensus disorder prediction 62 92 - -
Gso12g0491 164 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0491 Gso-Chr12 4357450 4358445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0491 28 160 C2H2 Transcription Factor Family AT3G53820 35.971 6.29e-21 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso12g0491 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0491 - - gmx:100527724 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0491 12 4357450 4358445 Gso11g1152 11 10341861 10342822 GST