Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0487 ATGGAACACGAGAAAGCCCCTATCTTGGTTGAAGAAAGGACGATGCAGGAAATTGAGATTCCCATTGCCTCTGAAAGACTTGATGTTCTTCCTATGAAGGCAGACTCATCTTGCAGTTCTGTTTGTCCTTTTTCCGGACAAGAAAACAGTGTTGTGGCATCAAAGGAGTCTTCAAAGTCAGCAAAGAAACTCTCTGGACTCATTGTTTTCTATGCTATTGTTATGGTTGTGGAACTTATTGGTGGAATAAAAGCTCACAGCCTAGCAGTCATTAGTGATGCAGCACACTTGCTTTCTGATATTGCTGGATTCTCTATCTCTCTTTTTGCAGTGTGGGCTTCAGGTTGGGAGGCAACACCGCACCAATCTTTTGGATACAATCGTCTTGAGGTTTTGGGGGCTCTTGCGTCTGTGCAGTTAATTTGGTTGATATCTGGTTTTTTGATATACGAAGCAATTGGTAGAATTCTCGTCCGAAATGCCAGTGTGAAAGGAAAGCTCATGCTTGCAATTGCAGCACTTGGGTTTGTTCTTAACTTCATCATGGTTGCATGGATTGGTCATGATCATAGTCATCACCACCATCATCATCATCATGGTTGTGAAAGCTCGGGTCATGATCATAATCATCATCAATGCCAGACAGATCATGATCATGGGAAGGAGGAACAATCTATTATAACTGATGAGGAGAATGTTACCCTGGTTTCAAGTATTCAGACAAACACTAATGTCTTGAACATAAATCTGCAGGGGGCATATTTGCATGTCATGGCTGATATGATTCAATCTATTGGAGTGATGATTGCTGGAGCCATAATATGGGCAAAACCTGAGTGGTTTATGGTTGACCTTGTGTGTACTCTTCTATTTTCTGTTTTGTCTTTAAGTACTACTCTTCCCATGCTTAGGAATATTTATGGCATTCTGATGGAAAGGACACCAAGTGAGATCGATATTAGTAAGCTGGAAAATGGCCTCCTAAATATCAAGGGAGTGCAGGATGTTCATGACTTGCACGTTTGGGCTATAACTGTTGGAAAATGTGTACTGTCTTGCCACGTAGTGGCTGAGCCTGGCATAAGTTCCATTGATTTACTTGGCACGATTAAACATTACTGTGAAAAAAAGAATCAAATACAACATGTAACCATACAAATTGAGTAG 1167 0.4096 MEHEKAPILVEERTMQEIEIPIASERLDVLPMKADSSCSSVCPFSGQENSVVASKESSKSAKKLSGLIVFYAIVMVVELIGGIKAHSLAVISDAAHLLSDIAGFSISLFAVWASGWEATPHQSFGYNRLEVLGALASVQLIWLISGFLIYEAIGRILVRNASVKGKLMLAIAALGFVLNFIMVAWIGHDHSHHHHHHHHGCESSGHDHNHHQCQTDHDHGKEEQSIITDEENVTLVSSIQTNTNVLNINLQGAYLHVMADMIQSIGVMIAGAIIWAKPEWFMVDLVCTLLFSVLSLSTTLPMLRNIYGILMERTPSEIDISKLENGLLNIKGVQDVHDLHVWAITVGKCVLSCHVVAEPGISSIDLLGTIKHYCEKKNQIQHVTIQIE* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0487 388 SUPERFAMILY Cation efflux protein transmembrane domain-like 62 312 IPR027469 -
Gso12g0487 388 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 8 388 - -
Gso12g0487 388 TIGRFAM CDF: cation diffusion facilitator family transporter 64 388 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Gso12g0487 388 Gene3D Cation efflux protein transmembrane domain 60 310 IPR027469 -
Gso12g0487 388 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 315 388 IPR036837 -
Gso12g0487 388 Pfam Cation efflux family 68 311 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Gso12g0487 388 PANTHER METAL TOLERANCE PROTEIN B 8 388 - -
Gso12g0487 388 MobiDBLite consensus disorder prediction 202 224 - -
Gso12g0487 388 MobiDBLite consensus disorder prediction 196 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0487 Gso-Chr12 4324580 4326567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0487 1 388 Inorganic Solute Cotransporters AT2G29410 49.872 3.29e-119 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0487 K14689 - gmx:100777590 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0487 12 4324580 4326567 Gso11g1150 11 10324870 10326946 GST