Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0478 ATGAGGAAGCCCGAGGTTTCTGGAAACAACAACAACAACAACAATATTAATAACAAGCTTAGAAAAGGGTTGTGGTCACCTGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAGTGGACAAGGTTGTTGGAGCGATGTAGCCAGAAATGCTGGCCTTCAAAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAACTACTTGAGGCCTGATCTTAAACGAGGTGCATTCTCACAACAAGAAGAGGAACTCATCATCCACTTGCATTCCCTTCTCGGAAACAGATGGTCTCAAATAGCGGCGCGCTTACCAGGGAGAACAGACAATGAAATTAAGAATTTTTGGAATTCAACAATAAAGAAAAGACTCAAGAACATGTCATCCAACACCTCACCAAATGGAAGCGAGTCCTCATATGAGCCTAATAACAGAGACCTTAACATGGCAGGGTTTACTACTTCTAATACCCAAGATCAACAACATGCTGATTTTATGCCTATGTTCAATTCATCATCTCAATCACCCTCCATGCATGCCATGGTTCTCAATTCCATAATTGACAGGTTGCCTATGCTAGAGCATGGACTAAACATGCCATGTTCTGGTGGATTCTTCAATAGCACAGGGCCATGCTTCTCATCATCACAAAGTGGAGTTGACAACAAAGGGATTTATTTGGAAAATGGAGGAGTATTTGGGAGTGTAAATATTGGTGCAGAAGGGGATGTGTATGTTCCCCCTCTAGAGAGTGTTAGCACTACTTCTGACCATAACCTGAAAGTGGAGAGCACATGCAACACAGATACTAACAATAGTTACTTTGATGACATAAACAGTATCCTCCTTAATAATTGCAACATTAATAGCAACAATAAGAGAGCTGAAAATAGGGCTGGTGGGGTGGAGAATTTGTTTCAGGAAGAGTTAACCATTGGAGAGTGGGACTTGGAGGAGTTAATGAAAGATGTTTCATCCTTTCCCTTTCTTGATTTTTCAAATATCCAATAA 1011 0.4115 MRKPEVSGNNNNNNNINNKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSNTSPNGSESSYEPNNRDLNMAGFTTSNTQDQQHADFMPMFNSSSQSPSMHAMVLNSIIDRLPMLEHGLNMPCSGGFFNSTGPCFSSSQSGVDNKGIYLENGGVFGSVNIGAEGDVYVPPLESVSTTSDHNLKVESTCNTDTNNSYFDDINSILLNNCNINSNNKRAENRAGGVENLFQEELTIGEWDLEELMKDVSSFPFLDFSNIQ* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0478 336 PANTHER MYB DOMAIN PROTEIN 55 1 333 - -
Gso12g0478 336 SMART sant 74 122 IPR001005 -
Gso12g0478 336 SMART sant 21 71 IPR001005 -
Gso12g0478 336 PANTHER MYB TRANSCRIPTION FACTOR 1 333 - -
Gso12g0478 336 CDD SANT 25 69 IPR001005 -
Gso12g0478 336 Gene3D - 19 75 - -
Gso12g0478 336 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Gso12g0478 336 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Gso12g0478 336 MobiDBLite consensus disorder prediction 126 152 - -
Gso12g0478 336 MobiDBLite consensus disorder prediction 1 21 - -
Gso12g0478 336 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Gso12g0478 336 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Gso12g0478 336 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Gso12g0478 336 Gene3D - 76 148 - -
Gso12g0478 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Gso12g0478 336 CDD SANT 77 117 IPR001005 -
Gso12g0478 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0478 Gso-Chr12 4264209 4267082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0478 1 332 MYB Transcription Factor Family AT3G08500 42.975 2.10e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso12g0478 Myb_DNA-binding 9.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0478 K09422 - gmx:100786151 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0478 12 4264209 4267082 Gso11g1136 11 10235755 10238401 GST
Gso15g0306 15 2779033 2782043 Gso12g0478 12 4264209 4267082 PCT
Gso11g3499 11 50856650 50859489 Gso12g0478 12 4264209 4267082 PCT
Gso12g0478 12 4264209 4267082 Gso15g0306 15 2779033 2782043 PCT
Gso12g0478 12 4264209 4267082 Gso11g3499 11 50856650 50859489 PCT