Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso12g0474 | ATGGTAGCAACGGCGATCGAGGAAGTGCGAACCCTCTGGATTGGCGATTTACAGTACTGGGTCGACGAGTCCTACCTCTCTCAGTGCTTCGCCCACAGCGGCGAAGTGGTTTCCATCAAAATCATCCGCAACAAGCTGACGGGCCAGCCCGAGGGCTACGGCTTCGTCGAGTTCGTCTCGCACGCCTCGGCCGAAGCCTTTCTCCGAACCTTCAACGGGGCCCAAATGCCCGGCACGGACCAGACCTTCAGGCTCAATTGGGCCTCGTTCGGGGACTCCGGGCCCGACCACTCCATCTTCGTCGGCGATCTCGCCCCCGACGTCACCGATTTCATCCTCCAGGAGACTTTCCGGGCCCATTATCCCTCCGTTAAAGGGTCCAAAGTCGTCACCGACCCCGCCACGGGCCGCTCCAAGGGCTATGGGTTTGTTAAGTTCGCCGATGAGGCCCAGAGGAACCGCGCCATGACTGAAATGAACGGCGTTTATTGCTCCACGCGACCAATGCGTATCAGCGCGGCTACTCCTAAGAAGAATGCTTCTTTTCAACACCAATATGCTCCACCTAAAGCAATGTATCAATTTCCTGCATACACTGCTCCAGTGAGTACTGTTGCGCCGGAGAATGATGTGAATAATACCACTGTTTGTATTGGTAATTTGGATCTTAATGTGACGGAGGAGGAGCTTAAGCAAGCCTTTGTGCAATTTGGTGATATTGTGTTGGTCAAAATTTATGCGGGCAAAGGATATGGTTATGTTCAATTTGGAACTAGAGCGTCTGCTGAAGATGCCATTCAGAGGATGCAAGGGAAGGTAATAGGTCAGCAAGTGATCCAAATTTCTTGGGGCAGTACCTTGACAGCTAGACAGGATGTACCCGGTGGCTGGGGTGCACAGATGGATCCAAGTCAATGGAGTGCTTACTACGGATATGGACAGGGTTATGAATCATATGCTTATGGTGCTACTCATGATCCCTCCTTGTATGCTTATGGTGCATATGCCGGTTATGCACAATACCCTCAGAATGTTGAAGGTGCTCAAGACATGTCAGCAGTGTCTATGCCTATGGAGGAATTGTATGACCCCCTGGCAATGCCTGATGTCGATAAATTAAATGCTGCATATCTTTCAATACACGGAAGTTCCATTTTAGGGCGGTCCCTTTGGCAGAGAACTTCACAATCTTTACAGCAAGCCTAG | 1206 | 0.5108 | MVATAIEEVRTLWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAFLRTFNGAQMPGTDQTFRLNWASFGDSGPDHSIFVGDLAPDVTDFILQETFRAHYPSVKGSKVVTDPATGRSKGYGFVKFADEAQRNRAMTEMNGVYCSTRPMRISAATPKKNASFQHQYAPPKAMYQFPAYTAPVSTVAPENDVNNTTVCIGNLDLNVTEEELKQAFVQFGDIVLVKIYAGKGYGYVQFGTRASAEDAIQRMQGKVIGQQVIQISWGSTLTARQDVPGGWGAQMDPSQWSAYYGYGQGYESYAYGATHDPSLYAYGAYAGYAQYPQNVEGAQDMSAVSMPMEELYDPLAMPDVDKLNAAYLSIHGSSILGRSLWQRTSQSLQQA* | 402 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso12g0474 | 401 | SUPERFAMILY | RNA-binding domain, RBD | 6 | 87 | IPR035979 | GO:0003676 | |
Gso12g0474 | 401 | CDD | RRM1_SECp43_like | 11 | 91 | - | - | |
Gso12g0474 | 401 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 10 | 90 | IPR000504 | GO:0003723 | |
Gso12g0474 | 401 | PANTHER | POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED | 4 | 342 | - | - | |
Gso12g0474 | 401 | CDD | RRM2_SECp43_like | 96 | 175 | - | - | |
Gso12g0474 | 401 | SUPERFAMILY | RNA-binding domain, RBD | 95 | 185 | IPR035979 | GO:0003676 | |
Gso12g0474 | 401 | SMART | rrm1_1 | 215 | 282 | IPR000504 | GO:0003723 | |
Gso12g0474 | 401 | SMART | rrm1_1 | 11 | 86 | IPR000504 | GO:0003723 | |
Gso12g0474 | 401 | SMART | rrm1_1 | 98 | 172 | IPR000504 | GO:0003723 | |
Gso12g0474 | 401 | Gene3D | - | 199 | 291 | IPR012677 | - | |
Gso12g0474 | 401 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 97 | 176 | IPR000504 | GO:0003723 | |
Gso12g0474 | 401 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 99 | 164 | IPR000504 | GO:0003723 | |
Gso12g0474 | 401 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 12 | 79 | IPR000504 | GO:0003723 | |
Gso12g0474 | 401 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 216 | 279 | IPR000504 | GO:0003723 | |
Gso12g0474 | 401 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 214 | 286 | IPR000504 | GO:0003723 | |
Gso12g0474 | 401 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 4 | 342 | - | - | |
Gso12g0474 | 401 | SUPERFAMILY | RNA-binding domain, RBD | 193 | 315 | IPR035979 | GO:0003676 | |
Gso12g0474 | 401 | Gene3D | - | 9 | 89 | IPR012677 | - | |
Gso12g0474 | 401 | Gene3D | - | 90 | 185 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso12g0474 | Gso-Chr12 | 4228383 | 4231828 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso12g0474 | 11 | 292 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 25.517 | 2.03e-22 | 97.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso12g0474 | - | - | gmx:100813616 | 805.053 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso12g0474 | 12 | 4228383 | 4231828 | Gso11g1131 | 11 | 10197931 | 10201564 | GST | |
Gso15g0303 | 15 | 2752536 | 2754725 | Gso12g0474 | 12 | 4228383 | 4231828 | PCT | |
Gso11g3502 | 11 | 50884915 | 50887763 | Gso12g0474 | 12 | 4228383 | 4231828 | PCT | |
Gso12g0474 | 12 | 4228383 | 4231828 | Gso15g0303 | 15 | 2752536 | 2754725 | PCT | |
Gso12g0474 | 12 | 4228383 | 4231828 | Gso11g3502 | 11 | 50884915 | 50887763 | PCT |