Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0474 ATGGTAGCAACGGCGATCGAGGAAGTGCGAACCCTCTGGATTGGCGATTTACAGTACTGGGTCGACGAGTCCTACCTCTCTCAGTGCTTCGCCCACAGCGGCGAAGTGGTTTCCATCAAAATCATCCGCAACAAGCTGACGGGCCAGCCCGAGGGCTACGGCTTCGTCGAGTTCGTCTCGCACGCCTCGGCCGAAGCCTTTCTCCGAACCTTCAACGGGGCCCAAATGCCCGGCACGGACCAGACCTTCAGGCTCAATTGGGCCTCGTTCGGGGACTCCGGGCCCGACCACTCCATCTTCGTCGGCGATCTCGCCCCCGACGTCACCGATTTCATCCTCCAGGAGACTTTCCGGGCCCATTATCCCTCCGTTAAAGGGTCCAAAGTCGTCACCGACCCCGCCACGGGCCGCTCCAAGGGCTATGGGTTTGTTAAGTTCGCCGATGAGGCCCAGAGGAACCGCGCCATGACTGAAATGAACGGCGTTTATTGCTCCACGCGACCAATGCGTATCAGCGCGGCTACTCCTAAGAAGAATGCTTCTTTTCAACACCAATATGCTCCACCTAAAGCAATGTATCAATTTCCTGCATACACTGCTCCAGTGAGTACTGTTGCGCCGGAGAATGATGTGAATAATACCACTGTTTGTATTGGTAATTTGGATCTTAATGTGACGGAGGAGGAGCTTAAGCAAGCCTTTGTGCAATTTGGTGATATTGTGTTGGTCAAAATTTATGCGGGCAAAGGATATGGTTATGTTCAATTTGGAACTAGAGCGTCTGCTGAAGATGCCATTCAGAGGATGCAAGGGAAGGTAATAGGTCAGCAAGTGATCCAAATTTCTTGGGGCAGTACCTTGACAGCTAGACAGGATGTACCCGGTGGCTGGGGTGCACAGATGGATCCAAGTCAATGGAGTGCTTACTACGGATATGGACAGGGTTATGAATCATATGCTTATGGTGCTACTCATGATCCCTCCTTGTATGCTTATGGTGCATATGCCGGTTATGCACAATACCCTCAGAATGTTGAAGGTGCTCAAGACATGTCAGCAGTGTCTATGCCTATGGAGGAATTGTATGACCCCCTGGCAATGCCTGATGTCGATAAATTAAATGCTGCATATCTTTCAATACACGGAAGTTCCATTTTAGGGCGGTCCCTTTGGCAGAGAACTTCACAATCTTTACAGCAAGCCTAG 1206 0.5108 MVATAIEEVRTLWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAFLRTFNGAQMPGTDQTFRLNWASFGDSGPDHSIFVGDLAPDVTDFILQETFRAHYPSVKGSKVVTDPATGRSKGYGFVKFADEAQRNRAMTEMNGVYCSTRPMRISAATPKKNASFQHQYAPPKAMYQFPAYTAPVSTVAPENDVNNTTVCIGNLDLNVTEEELKQAFVQFGDIVLVKIYAGKGYGYVQFGTRASAEDAIQRMQGKVIGQQVIQISWGSTLTARQDVPGGWGAQMDPSQWSAYYGYGQGYESYAYGATHDPSLYAYGAYAGYAQYPQNVEGAQDMSAVSMPMEELYDPLAMPDVDKLNAAYLSIHGSSILGRSLWQRTSQSLQQA* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0474 401 SUPERFAMILY RNA-binding domain, RBD 6 87 IPR035979 GO:0003676
Gso12g0474 401 CDD RRM1_SECp43_like 11 91 - -
Gso12g0474 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 90 IPR000504 GO:0003723
Gso12g0474 401 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 4 342 - -
Gso12g0474 401 CDD RRM2_SECp43_like 96 175 - -
Gso12g0474 401 SUPERFAMILY RNA-binding domain, RBD 95 185 IPR035979 GO:0003676
Gso12g0474 401 SMART rrm1_1 215 282 IPR000504 GO:0003723
Gso12g0474 401 SMART rrm1_1 11 86 IPR000504 GO:0003723
Gso12g0474 401 SMART rrm1_1 98 172 IPR000504 GO:0003723
Gso12g0474 401 Gene3D - 199 291 IPR012677 -
Gso12g0474 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 176 IPR000504 GO:0003723
Gso12g0474 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 164 IPR000504 GO:0003723
Gso12g0474 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Gso12g0474 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 279 IPR000504 GO:0003723
Gso12g0474 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 286 IPR000504 GO:0003723
Gso12g0474 401 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 4 342 - -
Gso12g0474 401 SUPERFAMILY RNA-binding domain, RBD 193 315 IPR035979 GO:0003676
Gso12g0474 401 Gene3D - 9 89 IPR012677 -
Gso12g0474 401 Gene3D - 90 185 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0474 Gso-Chr12 4228383 4231828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0474 11 292 Eukaryotic Initiation Factors Gene Family AT1G71770 25.517 2.03e-22 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0474 - - gmx:100813616 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0474 12 4228383 4231828 Gso11g1131 11 10197931 10201564 GST
Gso15g0303 15 2752536 2754725 Gso12g0474 12 4228383 4231828 PCT
Gso11g3502 11 50884915 50887763 Gso12g0474 12 4228383 4231828 PCT
Gso12g0474 12 4228383 4231828 Gso15g0303 15 2752536 2754725 PCT
Gso12g0474 12 4228383 4231828 Gso11g3502 11 50884915 50887763 PCT