Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0471 ATGACCAATTCCTACACCTCCAATGACCTTAACTTTTGGTTGGACCTCAATTCACCATGTCTTCTCTCCTCTCCTTCTCCTTCTTCCATCAATCCACCATTCTATTTTCCTTCCAATTATCATAATAGTAATAACTACACAAGTGCCATATCTTCTAATACTCATCATCAGTTCCAACCCTCTCCTCCTCAAAGAAAAGCCCTTCCCCTCCTTCATCCAAGACATGAAGAAGAAGAAGATCTTGAATCTTCATTCAGTGTCATGGAAGTGGACAAGAAAAAGAAAGAGCTGAGTTCATCATCTAGTTTCTTGGATGAAGAAGATGCTGCAGTGACTGTGGCCTTACACTTAGGGCTTCCAAGCACGAGTATTGCATCTTCTGCTGATTTAGCTTCTTCAAGCCTATACTCAACAGAGGCTTCTTCAGACAAAGAAGAAGAAGAAGAAAAAGTAGTACTCACTGATGCTTCGGGGCTTCTTCTGTCAAATAGAATTAACAGAGGACAATATTGGATCCCTACTTCTTCTCAGATTCTGATTGGTCCAACACAGTTCCCATGCCCCCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGGAAGGGACCAGAGTCCCTAAGGGGAACACAACCCACGGCTATGCTAAGACTTCCTTGCTATTGCTGTGCACCGGGGTGCAAGAACAACATCGACCATCCAAGAGCAAAACCACTCAAAGACTTCAGAACCCTTCAAACTCACTACAAGAGAAAGCATGGGACAAAGCCTTTCGTGTGCAGAAAATGTTGCAAAGCATTTGCTGTGAGGGGTGATTGGAGAACTCACGAAAAGAACTGTGGAAAACGCTGGTATTGCTCTTGTGGGTCTGATTTTAAGCACAAAAGATCTCTTAAGGATCATATCAAGGCATTTGGGTATGGACACACGGCTTGTGGAAATGACTGCAACCTAGATCAAGATGATGATCAAGTGGGCTCTGAAATTGAATAA 1026 0.4288 MTNSYTSNDLNFWLDLNSPCLLSSPSPSSINPPFYFPSNYHNSNNYTSAISSNTHHQFQPSPPQRKALPLLHPRHEEEEDLESSFSVMEVDKKKKELSSSSSFLDEEDAAVTVALHLGLPSTSIASSADLASSSLYSTEASSDKEEEEEKVVLTDASGLLLSNRINRGQYWIPTSSQILIGPTQFPCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGTKPFVCRKCCKAFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGYGHTACGNDCNLDQDDDQVGSEIE* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0471 341 Gene3D Classic Zinc Finger 184 207 - -
Gso12g0471 341 Gene3D Classic Zinc Finger 246 325 - -
Gso12g0471 341 PANTHER ZINC FINGER PROTEIN WIP2 6 341 IPR043584 GO:0003700|GO:0010468
Gso12g0471 341 ProSitePatterns Zinc finger C2H2 type domain signature. 187 207 IPR013087 -
Gso12g0471 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 185 212 IPR013087 -
Gso12g0471 341 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 6 341 - -
Gso12g0471 341 SUPERFAMILY beta-beta-alpha zinc fingers 251 289 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0471 Gso-Chr12 4199861 4202730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0471 1 326 C2H2 Transcription Factor Family AT1G51220 58.284 1.21e-123 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso12g0471 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0471 - - gmx:100802239 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0471 12 4199861 4202730 Gso11g1126 11 10163856 10166583 GST
Gso15g0297 15 2698493 2701059 Gso12g0471 12 4199861 4202730 PCT
Gso11g3507 11 50937897 50940323 Gso12g0471 12 4199861 4202730 PCT
Gso12g0471 12 4199861 4202730 Gso15g0297 15 2698493 2701059 PCT
Gso12g0471 12 4199861 4202730 Gso11g3507 11 50937897 50940323 PCT