Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0466 ATGGATTCAGCAAGAACAGCTCCTCCCCCGTGGCAGGAGCTGGACTTGGACAACCTCAAACCCCTCAAAGTCCTAGGAAAAGGCGGCATGGGTACTGTCTTCCTCGTACAGGCCGCCAACAATACCCGCTTCGCCCTCAAAGTGGTGGACAAAACGTGCGTCCACGCGAAGCTGGACGCGGAGCGGCGCGCGCGTTGGGAAATCCAAGTCCTCTCAACTCTATCCCACCCTTTCCTCCCTTCCCTCATGGGAACGTTCGAGTCCCCACAGTTCCTTGCGTGGGCCCTACCCTACTGCCCCGGCGGCGACCTCAACGTCCTCCGCTACCGCCAAACCGACCGCGCCTTCTCCCCCGCCGTCATCCGCTTCTACGTCGCCGAAATCCTCTGCGCCCTCGACCACCTCCATTCCATGGGCATAGCCTACCGCGACCTAAAACCCGAAAATGTCCTCGTTCAAAACACCGGCCACATCACCCTCACCGATTTCGACCTCTCCCGCAAACTCAATCCCAAACCTAAACCTAATCCACAAGTTCCTTCTATCCCCTTGCCCAATTCTAACGTTCCCGAACCTCGCCGGAAACACCGCCGGAATTTCTCCCGGTGGATCTCCCTCTTCCCGCCGGACGGGACTCACCATAACAACAACAAAAACGGACTCAAGAAGGCGAAGTCCGCGCGAGTCAGCCCGGTGAGTCGGAGAAAACCGAGTTTCTCCAACGGCGAACGATCCAACTCGTTCGTCGGCACGGAAGAATACGTCTCGCCGGAGGTCGTCCGCGGCGACGGACACGAGTTCGCCGTCGATTGGTGGGCGCTTGGAATACTAATCTACGAAATGCTATACGGTACGACGCCGTTTAAGGGAAAGAATCGCAAGGAAACGTTTCGGAATGTTATCACGAAGCCGCCGGTTTTTGTGGGAAAGAGAACGGCGTTGACGGATCTTATTGAGAAGCTTTTGGAGAAGGATCCGACGAAGAGGTTGGGGTACACGCGCGGTGCCGTGGAGATCAAGGAGCACGAGTTTTTCCGAGGGGTTCGGTGGGAGCTTTTGACGGAGGTGGTGCGCCCGCCGTTCATTCCGACGCGGGACGACGGCGCCGGAGATTCGACGGATAGGCTTTCCGACCGGAATTGTGGCTTCGATATTAGGGGTTACTTTCTGAATCTTAAATCGTCGCCGTCGTTGCCGGGTTCGCCGTTGCCATCGCCGTCGTGCAGGTTTAAGAAGAATGTTTCGCTAACAGAATTCTAA 1260 0.569 MDSARTAPPPWQELDLDNLKPLKVLGKGGMGTVFLVQAANNTRFALKVVDKTCVHAKLDAERRARWEIQVLSTLSHPFLPSLMGTFESPQFLAWALPYCPGGDLNVLRYRQTDRAFSPAVIRFYVAEILCALDHLHSMGIAYRDLKPENVLVQNTGHITLTDFDLSRKLNPKPKPNPQVPSIPLPNSNVPEPRRKHRRNFSRWISLFPPDGTHHNNNKNGLKKAKSARVSPVSRRKPSFSNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILIYEMLYGTTPFKGKNRKETFRNVITKPPVFVGKRTALTDLIEKLLEKDPTKRLGYTRGAVEIKEHEFFRGVRWELLTEVVRPPFIPTRDDGAGDSTDRLSDRNCGFDIRGYFLNLKSSPSLPGSPLPSPSCRFKKNVSLTEF* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0466 419 MobiDBLite consensus disorder prediction 173 187 - -
Gso12g0466 419 Pfam Protein kinase domain 240 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0466 419 Pfam Protein kinase domain 22 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0466 419 PANTHER FLIPPASE KINASE 1-RELATED 14 369 - -
Gso12g0466 419 ProSiteProfiles Protein kinase domain profile. 19 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0466 419 Gene3D Transferase(Phosphotransferase) domain 1 103 172 - -
Gso12g0466 419 SMART serkin_6 19 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0466 419 Gene3D Transferase(Phosphotransferase) domain 1 242 364 - -
Gso12g0466 419 Gene3D Phosphorylase Kinase; domain 1 19 102 - -
Gso12g0466 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Gso12g0466 419 MobiDBLite consensus disorder prediction 211 247 - -
Gso12g0466 419 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 14 369 - -
Gso12g0466 419 ProSitePatterns Protein kinases ATP-binding region signature. 25 47 IPR017441 GO:0005524
Gso12g0466 419 MobiDBLite consensus disorder prediction 165 195 - -
Gso12g0466 419 SUPERFAMILY Protein kinase-like (PK-like) 16 376 IPR011009 -
Gso12g0466 419 MobiDBLite consensus disorder prediction 233 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0466 Gso-Chr12 4121204 4122712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0466 14 419 AGC Kinase Gene Family AT3G20830 58.513 9.06e-159 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gso12g0466 Pkinase 2.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0466 - K08286 gmx:100785281 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0466 12 4121204 4122712 Gso11g1121 11 10098027 10099475 GST
Gso11g3513 11 50975105 50976763 Gso12g0466 12 4121204 4122712 PCT
Gso12g0466 12 4121204 4122712 Gso11g3513 11 50975105 50976763 PCT