Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0461 ATGGAGTCAGATCTTCGGCAGCACCCTCCCATGTTTTTGGATCACCACCACCAGCAGCAGCAGATGAATTCTGGGTTGACACGGTACCGATCGGCGCCAAGTTCGTATTTTTCGAGCATCATTGACCGTGAGTTCTACGAACACGTTTTCAATCGACCCTCTAGCCCCGAAACAGAGCGAATGTTGACACGCTTTGTGGATAGTCTTGGTGGAGGTGATGCTGCTGATGCTGATGCAGAGGACTCACTTGCTAATACTCAGAATCCCCCAACAACTGTTGTTGCGGTTAAGGAAGAGGTTAATCATCAACCTCAGGATGTGACATCCATGAATAATGAACCACTTGTTCTCCAACAACAACAGCAGCAACAAAGTAATAATATGAATAATTATGGCTCTTCTGGTACTCAGAATTTTTACCAAAGCACTGGACGACCACCTTTGCCAAACCAGATGAAAACTGGTCGTGGAAGTAGTTCCAGTCTTATCAGACATGGTAGCTCACCTGCTGGATTGTTTTCAAACATGAACATTGATACTGGCTATGCTGCTGTTAGAGGCATGGGAACTATGGGAGCTGCTGCTGCTAATAACACCACCGAGGAAGCAAACTTTTCACCCGCAACAAGGATGAAGAATGCAACAAACTTCTCTTCAGGACTAATGTCATCAAGGCCTGGAATTGGAAACAAGAGCAACACACAGAACAATGCAGAAAATGAAGGGTTTGCTGAAAGCCAGGGCAATGAATTTATCCCTGCAGGTTTCCCCGTTGGTCCGTGGGATGATTCTGCAATCATGTCTGACAATATGACAGGTCTGAAGAGATTTAGAGATGAAGATGTGAAACCATTTTCTGGTTTAAATGCACCTGAAAGTCAGAATGAAACTGGAGGCCAACAACCTTCTTCTTCTGCTTTGGCTCATCAATTGAGTTTGCCAAACACTTCTGCAGAAATGGCAGCCATTGAGAAGTTTCTTCAGCTCTCGGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGGGGCTGTGCCACTCACCCTAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAGCTACAAGATCTGGTCCCCAACATGGATAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGACCTTCAAAACCAAGTTGAGGCACTTTCGGACAATCGGGCAAAGTGTACGTGTTTACACAAGAAGCAGCAATAA 1248 0.4503 MESDLRQHPPMFLDHHHQQQQMNSGLTRYRSAPSSYFSSIIDREFYEHVFNRPSSPETERMLTRFVDSLGGGDAADADAEDSLANTQNPPTTVVAVKEEVNHQPQDVTSMNNEPLVLQQQQQQQSNNMNNYGSSGTQNFYQSTGRPPLPNQMKTGRGSSSSLIRHGSSPAGLFSNMNIDTGYAAVRGMGTMGAAAANNTTEEANFSPATRMKNATNFSSGLMSSRPGIGNKSNTQNNAENEGFAESQGNEFIPAGFPVGPWDDSAIMSDNMTGLKRFRDEDVKPFSGLNAPESQNETGGQQPSSSALAHQLSLPNTSAEMAAIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVEYIKDLQNQVEALSDNRAKCTCLHKKQQ* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0461 415 Pfam Helix-loop-helix DNA-binding domain 348 394 IPR011598 GO:0046983
Gso12g0461 415 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 412 - -
Gso12g0461 415 MobiDBLite consensus disorder prediction 288 308 - -
Gso12g0461 415 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 16 412 - -
Gso12g0461 415 MobiDBLite consensus disorder prediction 283 308 - -
Gso12g0461 415 Gene3D - 344 414 IPR036638 GO:0046983
Gso12g0461 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 393 IPR011598 GO:0046983
Gso12g0461 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 406 IPR036638 GO:0046983
Gso12g0461 415 SMART finulus 349 399 IPR011598 GO:0046983
Gso12g0461 415 Coils Coil 383 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0461 Gso-Chr12 4064107 4069057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0461 1 409 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 41.527 8.19e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso12g0461 HLH 4.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0461 - - gmx:100803833 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0461 12 4064107 4069057 Gso11g1117 11 10025398 10030320 GST