Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0440 ATGTATCCAAAACGGTCAGGCCAAGATGGCCCTGATTCCAGACAGGTGCGCTCAAGTGATAGGATCAAGACAAGGCCAAACGTTTATGGCCGGCCATATTTGTATTACAACCAAAACCTTAGGCGCACCAGGAAAAGCAAGATCAAGACAAGGACGGCAGCTTCACAGATTGCTAAGATGTTGCGTCCGGGGAATCGAAAATCAAAAGATTCTAATACTAATTCTGGCTCTGCCAACCTTCGACGTTCAACAAGGAAAAGAAGGCTTAATGTAAATCTTGAAGATTTTACGGACAGCTCTGGAGCTGAAGACGAAGACTTAATGAGACCACCTACATATCCATCATTGAGAAACCGGATGAAAAATAGTGACAGACGGGATGGTTTGATGTCTAATAAGCGCAAAAGAGTGGCGGAGACTAAACAAACACCTCGACGTGAAGGGCTGCGTCCTCGCCGTTCAAAGGGTGCTGCAATAGAACGATTAATTTTAGAATCAGATGATGAGCAAGACCTTTCAGAAGAAAAGGTTGATCAGGATGAAACAGAAAATGGAAATGATGTTGAGGAAAATGATGCAGATGATGGCCAAAAGGAGATTGAGGGGGATGCTGAGGGGGAAGATGAAGGTGAGGACGAAGGTGATGAAGATGGGGATGATGAAGAGGGTGAAGAAGAGCAGGATGGAAGAAGGCGCTATGATCTTCGAAATCGTTCAGATGTCCGCAGGTTCTCTATGGAGGAAGGGAAGGCCCAGCCAAGATCTCCTCGAAGAGTGTTACATCAAGGTATGGGAACTAAGGTCAGCAGGGATGTAAGGAAAGGTGGATCACGAGTTCATAAGCGTCATCGTTTAGCGAGGCCTGAAGATTCTGATGACTCCCTTCTTGTGGATGAGCTGGACCAAGGCCCAGCTATTCCATGGGGGCGAGGTGGCAACAGATCTGGTCCTCCTTGGCTATTTGGGGGCTTAGACATGCATGGAACAACAGCTTTCGGATTAAATCTTGCTGCATCAGGTTGGGGTCATCAGGGTGATGCGGTGGCTACTCTAACTTCGGGGATTCAAACTGCTGGACCAAGCTCTAAGGGAGGGGCAGATATCCAACCCTTACAGGTTGATGATAGTGTTAGTTTTGATGATATAGGTGGGCTCTCCGAATACATTGATGCTCTTAAGGAAATGGTTTTCTTTCCATTATTGTATCCAGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGGGTATTGTTATGTGGGCCCCCTGGCACAGGGAAAACATTAATTGCAAGAGCTTTGGCTTGTGCTGCTTCTAAAGCTGGCCAGAAGGTTAGCTTTTATATGCGTAAAGGAGCAGATGTGTTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTTGAGGAAGCACAAAGGAATCAACCTTCTATTATCTTCTTTGATGAAATAGATGGACTTGCACCTGTGAGGTCTAGTAAGCAAGAACAAATTCACAATTCCATTGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGACTCTCGTGGGCAAGTTGTTTTAATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCCTTACGACGCCCTGGTAGATTTGACCGTGAGTTTAACTTTCCCTTGCCTGGTTGTGAGGCACGTGCCGAGATATTAGACATTCACACTCGTAAGTGGAAGCATCCTCCTCCAAATGAGCTGAAAAAGGAACTTGCAGCTAGTTGTGTAGGTTACTGTGGTGCTGACCTGAAGGCTCTTTGTACTGAAGCTGCCATCCGTGCATTCCGTCAAAAATATCCACAGGTTTATACTAGTGATGACAAATTTGTCATTGATGTTGATTCTGTCAAGGTAGAAAAGACTCATTTTATTGAAGCCATGTCTACTATTACTCCTGCTGCTCATAGGGGAGCTATCGTGCACTCTAGGCCATTGTCTCTAGTAGTTCAACCATGTCTTCAGAGACATTTAGAGAAAGCCATGAGTATTATATCTGATATTTTCCCTCCAGCTTCAATTACATCAGAGTTGACCAAACTTTCGATGCTCTCCTACGGGTCTGCAATTCCACTTGTGTATCGGCCTAGGCTTATGCTTTGTGGTGGTGAAGGTACAGGGCTGGATCATCTTGGCCCTGCGGTTTTACATGAGCTGGAAAAATTTCCAGTACATTCATTGGGACTTCCATCTCTTCTGTCAGATCCTAGTGCAAAGACACCAGAGGAGGCATTGGTACATATATTTGGTGAAGCTAGAAGAACAACACCATCAATTCTCTACTTACCACAATTTGATGTTTGGTGGGAGACTGCTCATGAACAGCTCAGGGCTGTTCTCCTGACTTTGCTAGAAGAATTACCATCTGACTTGCCTATCTTACTGCTTGGTACATCCTCAGTTACACTTGCTGAAGTTGAGGAAGTGCCCACTTCCATTTTCCCTCATCGCTCAGTTTATAAAGTGAATATGCCATGTGCCAAAGATAGGACTTTGTTTTTCAATCTTTTGATAGAAGCTGCTATGTCAATATTGTTGGAGGGAATCAACAAGAAATCTCAGGATGCAGGATGCCTCCCTGAACTTCCCAAGGCTCCAAAATTGGCTAGTGGTCCAAAAGTGTCTGAGCTAAAAGCAAAGGTGGAAGCTGAGCAACATGCACTTCGTAGATTGCGAATGTGCCTTAGAGATGTTTGCAACCGGATTCTGTATGACAAACGATTTAATGCCTTCCATTATCCAGTGACAGACGAAGATGCACCAAATTATCGTTCAATTATACAGAACCCAATGGACATGGCTACCATTCTGCAGCATGTTGATAATGGTCACTATATTACAAGTGCTGCATTCCTGCAGGACATCAATCTCATTGTTTCCAATGCGAAGGCTTACAATGGAGAGGATTACAATGGTGCTAGGATTGTTAGTAGAGCTTGTGAGCTCCGTGATGCGGTGCATGGAATGCTCTCACAGATGGATCCAGCACTGGTTGCATATTGCGACAAGATTGCTAGCCAAGGTGGCCCAGTTCAGTTGTCTGATGAATTAGGGGATTCTACTTTCCCTGCTACTCCTGTTGTGCAGCTGGGTCAGAGTACTAGAATGAGTGCTCGACTTCGTCATGTCCAACCAGAGGTTAATATGGATCAGAGTTATGAAGTATTGAAGCGAACTAAGAAGATTGCCGAAGTGCATGCAGCAGAAGAAAAGTCACAACAAGATTCGGTGCCATCAAAGTCTTCCCTGGAGCAGCAGGCAAATGACACAAATTCTGAAAGGCTGGAACATGTGTCAATTGAAGGAGATTTGCATGGAACTTTTACAAATAACCTTGCTGATGGCAACAGTCCTGATGATGTCACAGTGCTAGACGGTGAATTTTTAGGAGAAGTAGAGTCTGTCAAGCAGCTTTTTGTGAAGCGTAGTGAAAATTACAGCATTCCACAACTTGAAAGGCTTTACACGAGAATTATGAAGGGCGTGTTTGAAACCAAAAATAAAGGAGTGAGTGGGGATCTTAAGTCTTCGGTTTTGAAGTTTCTGTTGAATTTTGTAGAGGATGATGCAAATTTCTAA 3606 0.4429 MYPKRSGQDGPDSRQVRSSDRIKTRPNVYGRPYLYYNQNLRRTRKSKIKTRTAASQIAKMLRPGNRKSKDSNTNSGSANLRRSTRKRRLNVNLEDFTDSSGAEDEDLMRPPTYPSLRNRMKNSDRRDGLMSNKRKRVAETKQTPRREGLRPRRSKGAAIERLILESDDEQDLSEEKVDQDETENGNDVEENDADDGQKEIEGDAEGEDEGEDEGDEDGDDEEGEEEQDGRRRYDLRNRSDVRRFSMEEGKAQPRSPRRVLHQGMGTKVSRDVRKGGSRVHKRHRLARPEDSDDSLLVDELDQGPAIPWGRGGNRSGPPWLFGGLDMHGTTAFGLNLAASGWGHQGDAVATLTSGIQTAGPSSKGGADIQPLQVDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKHPPPNELKKELAASCVGYCGADLKALCTEAAIRAFRQKYPQVYTSDDKFVIDVDSVKVEKTHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSIISDIFPPASITSELTKLSMLSYGSAIPLVYRPRLMLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTLLEELPSDLPILLLGTSSVTLAEVEEVPTSIFPHRSVYKVNMPCAKDRTLFFNLLIEAAMSILLEGINKKSQDAGCLPELPKAPKLASGPKVSELKAKVEAEQHALRRLRMCLRDVCNRILYDKRFNAFHYPVTDEDAPNYRSIIQNPMDMATILQHVDNGHYITSAAFLQDINLIVSNAKAYNGEDYNGARIVSRACELRDAVHGMLSQMDPALVAYCDKIASQGGPVQLSDELGDSTFPATPVVQLGQSTRMSARLRHVQPEVNMDQSYEVLKRTKKIAEVHAAEEKSQQDSVPSKSSLEQQANDTNSERLEHVSIEGDLHGTFTNNLADGNSPDDVTVLDGEFLGEVESVKQLFVKRSENYSIPQLERLYTRIMKGVFETKNKGVSGDLKSSVLKFLLNFVEDDANF* 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0440 1201 Gene3D - 553 638 - -
Gso12g0440 1201 PANTHER BNAC08G44480D PROTEIN 1 1196 - -
Gso12g0440 1201 MobiDBLite consensus disorder prediction 1083 1098 - -
Gso12g0440 1201 CDD AAA 413 552 - -
Gso12g0440 1201 Pfam AAA+ lid domain 579 616 IPR041569 -
Gso12g0440 1201 MobiDBLite consensus disorder prediction 1076 1103 - -
Gso12g0440 1201 MobiDBLite consensus disorder prediction 225 255 - -
Gso12g0440 1201 SMART bromo_6 897 1004 IPR001487 GO:0005515
Gso12g0440 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 701 930 IPR027417 -
Gso12g0440 1201 CDD Bromo_AAA 897 1007 - -
Gso12g0440 1201 Pfam ATPase family associated with various cellular activities (AAA) 417 552 IPR003959 GO:0005524|GO:0016887
Gso12g0440 1201 MobiDBLite consensus disorder prediction 60 292 - -
Gso12g0440 1201 MobiDBLite consensus disorder prediction 167 224 - -
Gso12g0440 1201 PRINTS Bromodomain signature 929 945 IPR001487 GO:0005515
Gso12g0440 1201 PRINTS Bromodomain signature 945 963 IPR001487 GO:0005515
Gso12g0440 1201 PRINTS Bromodomain signature 963 982 IPR001487 GO:0005515
Gso12g0440 1201 MobiDBLite consensus disorder prediction 1 30 - -
Gso12g0440 1201 Gene3D - 889 1017 IPR036427 GO:0005515
Gso12g0440 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 642 IPR027417 -
Gso12g0440 1201 ProSitePatterns AAA-protein family signature. 522 540 IPR003960 GO:0005524|GO:0016887
Gso12g0440 1201 SUPERFAMILY Bromodomain 895 1009 IPR036427 GO:0005515
Gso12g0440 1201 SMART AAA_5 413 554 IPR003593 -
Gso12g0440 1201 ProSiteProfiles Bromodomain profile. 920 982 IPR001487 GO:0005515
Gso12g0440 1201 PANTHER AAA DOMAIN-CONTAINING 1 1196 IPR045199 -
Gso12g0440 1201 Pfam Bromodomain 910 978 IPR001487 GO:0005515
Gso12g0440 1201 Gene3D - 375 645 IPR027417 -
Gso12g0440 1201 MobiDBLite consensus disorder prediction 119 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0440 Gso-Chr12 3843637 3851545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0440 363 617 Calmodulin-binding Proteins AT3G56690 36.680 8.18e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0440 K22531 - gmx:100787765 2299.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0440 12 3843637 3851545 Gso11g1093 11 9765934 9773625 GST