Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0437 ATGGGGCACAGTTCGAAGAAGAAGAAGCGCGGCGGCGGGAGCGGTCGCCGGAGCAAGGGGAGAACGCAGTCCAAAGACCACGCTTCTCAATTCGGCTCTGACGATTACGACCAGCTCTCCGAAGAGATTACCGCATTATGCGCAATTTTCGAAGAAGACTGCAAGGTTCTTCCAGGATCGCCTCCTCGAGTAGTTATTAAGCTCAGGCCTTACTCGAAGGACATGGGTTATGAGGACCTAGACGTTTCTGCTGTTCTTGCTGTCAGGTGCTTGCCTGGGTATCCCTTCAAGTGCCCCAAGTTGCAGATTACTCCGGAGAAAGGGTTATCAGAAGCTGATGCTAAAAAGCTTTTGTCTCTCCTCCAAGATCAGGCTACTTTAAATGCTAGGGAGGGACGAGTAATGATCTATAATTTGGTAGAGGCTGCTCAAGAATTTCTGTCTGGTATTGAGCCAATTGCCAAAACAAATGATTCTAAGCTTTTACACTCGATGGTGGAAAGCAATGAAGAATTGTTTCCCAAGGATATGACATCTGTAAATAAAAAGGGTTCTTTTGTTTACGGTTTTATAGACCTTTTCAGTGGTTGTGGAGAAACATGGAGTTGGAGTTTTGGAATGGATGAAACTGCAGTAAAAAGTTCTTCTCTTTCTCCATCTAAGTTAGATGCCTCAAAACCACTGGAGAAGAAATCTGATAGTAAGGAAACACCATTAATAATGCAAGAACTTCCTGCCAAATTAGATACTGTTGGAGAAGTTAGTGAAGACAGCAACAATAGTTTATCTTTGACTTCTTCAAGTAGATCTTTGGTGGAGGATTTTGTAGGGAACAAAAATGAAGGTGAGAAAGAGTATTTTATCGTTGATGAGTATACAACAGAACATAATGAAGGTATTAATGAAAGTGAGTCTTCAGAGTCTCTGTCTTCTGAATCCTTGCCTCATCACCAACCCTCTCAAACAGTTGAAAAGGATCTAATAATGGTTCACATGCTTCGCCTTGTTTGTGCTTCTAAGGGAACATTTGCTGACTGTTTGCCACAAGTGGTAACAGAGCTGTGCAATTTAGGTATCATTTCTGACTCAGCACGCGATATGGCATCTGAACCACCTTCCATTTTCAACAAAACCTTCAATCGTGTTTTCCAGAAACACCTGGCTTCATCCAGAATATCTCAATTTTGGAAACCTGATATTGGAGGCTCAAACACAGTTCCCCATGGTTCTCGATATTTGAATGATTTTGAGGAGCTACGACCTCTTGGTCATGGTGGTTTTGGTCATGTTGTATTGTGCAAAAATAAACTTGATGGAAGGCAGTATGCAGTAAAGAAAATTCGCCTCAAGGACAAAAGCATGCCTGACCGAATATTAAGGGAAGTGGCTACACTTTCTCGTTTACAGCATCAACATGTTGTTCGATATTATCAGGCATGGTTTGAAACTGGAGTTTCTGATTCTTATGGTGATTCTACTTGGGGTTCAAAGACTACAGTAAGCTCTACTTTCAGCTATAAAGCTGCAACCTCCAACGATGCCTTGGGGCACGAGAATCAGCTTGAATCAACTTACCTTTATATACAAATGGAGTACTGTCCCAGGACTCTTCGCCAGGTGTTTGAATCATATAATCATTTTGACAAAGAACTGGCCTGGCATTTGTTTCGCCAAATAGTGGAAGGCTTGGCACACATACATGGTCAAGGAATAATTCATCGGGACCTAACACCAAATAACATATTCTTTGATGCTCGCAATGATATTAAAATTGGTGATTTTGGTCTTGCCAAGTTCTTGAAGTTGGAGCAGCTGGATCAAGATCTGGGTCATCCTGCTGATGCAACAGGAGTTTCCATTGATGGCACTGGACAAGTGGGGACATATTTCTATACAGCTCCTGAAATTGAGCAAGGATGGCCCAAGATTGATGAAAAGGCTGATATGTACAGCTTAGGAGTGGTTTTCTTTGAGCTTTGGCACCCATTTGGGACAGGGATGGAGAGACATGTTATTTTATCTGATCTTAAACAGAAACGGGAAGTTCCACATACTTGGGTTGTTGAGTTTCCAGAACAGGAATCCTTGCTGCGACAGTTAATGTCTCCAGCTCCTTCAGATCGCCCTTCTGCCACAGAACTTCTGCAAAATGCATTTCCTCAACGAATGGAGTCTGAATTATTGGATGATATTCTACGAACAATGCAGAAATCAGAGGATACAAGCATATATGATAAAGTTTTAAATGCTATCTTTGACGAAGAGATGTTAAGCACAAAACACATTCGCCAGAACAGTTCATCCATTCAGTACACTGACTTCGAAACTGAGGTGCGAGATTATGTTGTAGATGCGAACAGGGAAATTTTCCGACAGCATTGTGCAAAGCACCTAGAAATACCTACAATGCGATTATTGGATGATTGTCCACAGTTTAATAGAAATGCAGTTAAACTTCTGACCCATGGAGGAGACATGCTTGAACTTTGCCACGAGTTGCGTTTGCCTTTTGTGAACTGGATTATTTCTAACCAGAAATCTTCATTCAAACGATATGAGATATCATGTGTCTTCAGAAGAGCAATTGGACATTCATCACCAAACCACTACCTTCAGGGAGATTTTGACATTATTGGTGGTACCTCAGCATTGACAGAAGCAGAGGTCATAAAGGTCACAAGGGACATAGTCACTTGTTTTTTCCATGAAGATTCATGTGACATTCATCTCAACCATGGTGACCTTCTGGATGCAATTTGGTCATGGATTGGAGTAAAGGTAGAACACAGACTCAAAGTAGCAGAGCTTCTTTCAATGATGGGTTCTTTGCGCCCACAATCCTCGGAAAGGAAATCAAAATGGGTTGTGATAAGGCGGCAGCTTTTGCAGGAACTGAATTTAGCAGAGGCTATGGTAAACAGGTTACAGACTGTAGGTTTAAGATTCTGTGGATCTGCTGATCAGGCACTCCCCCGACTCAGAGGAGCTCTTCCATCTGATAAACGTGCATTCAAGGCACTTGATGAATTGTCTGAGCTTGTGAGTCTCCTGAGAATTTGGAGGATTGACAAAAATATCTATATAGATGCATTAATGCCACCAACTGAAAGTTATCATAGAGATTTGTTTTTTCAGGTATACTTAAGGAAGGAGAACAGTCCTGGATCTCTCTCTGAAGGTGCCTTGCTGGCTGTTGGTGGTCGATATGACTATTTGTTTCATCAGTTGTGGAGTAGTGACTATAAAGGAAATCCTCCCACTGGTGTGGGAACTAGCCTTGCACTGGAGACAATAATTCAGAATTGTCCTGTAGATTTCAAGCCCAATAGAAACGAAGCCAGCATCAATATTCTTGTTTGTTCTAGAGGAGGAGGTGGTCTTCTGGTGGAGCGCATGGAGCTAGTTGCTGAATTATGGGAGGAGAACTTTAAGGCTGAATTTGTTCCTACACCTGATCCCAGTCTTACAGAGCAGTATGAGTATGCTAATGAACATGGTATCAAATGTCTTGTCATCATCACAGATACAGATTTCTCCTTGACAGGTTCTGTTAAGGTTCGACACCTTGAACATAAGAGGGAGAAAAATGTTGAGAAGAAAAACCTAGTCAAATTTCTATCGGATGCTATGGCAACACAATTTAGAAATCCCTCCATTTGGATTTGA 3666 0.4184 MGHSSKKKKRGGGSGRRSKGRTQSKDHASQFGSDDYDQLSEEITALCAIFEEDCKVLPGSPPRVVIKLRPYSKDMGYEDLDVSAVLAVRCLPGYPFKCPKLQITPEKGLSEADAKKLLSLLQDQATLNAREGRVMIYNLVEAAQEFLSGIEPIAKTNDSKLLHSMVESNEELFPKDMTSVNKKGSFVYGFIDLFSGCGETWSWSFGMDETAVKSSSLSPSKLDASKPLEKKSDSKETPLIMQELPAKLDTVGEVSEDSNNSLSLTSSSRSLVEDFVGNKNEGEKEYFIVDEYTTEHNEGINESESSESLSSESLPHHQPSQTVEKDLIMVHMLRLVCASKGTFADCLPQVVTELCNLGIISDSARDMASEPPSIFNKTFNRVFQKHLASSRISQFWKPDIGGSNTVPHGSRYLNDFEELRPLGHGGFGHVVLCKNKLDGRQYAVKKIRLKDKSMPDRILREVATLSRLQHQHVVRYYQAWFETGVSDSYGDSTWGSKTTVSSTFSYKAATSNDALGHENQLESTYLYIQMEYCPRTLRQVFESYNHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDLGHPADATGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTGMERHVILSDLKQKREVPHTWVVEFPEQESLLRQLMSPAPSDRPSATELLQNAFPQRMESELLDDILRTMQKSEDTSIYDKVLNAIFDEEMLSTKHIRQNSSSIQYTDFETEVRDYVVDANREIFRQHCAKHLEIPTMRLLDDCPQFNRNAVKLLTHGGDMLELCHELRLPFVNWIISNQKSSFKRYEISCVFRRAIGHSSPNHYLQGDFDIIGGTSALTEAEVIKVTRDIVTCFFHEDSCDIHLNHGDLLDAIWSWIGVKVEHRLKVAELLSMMGSLRPQSSERKSKWVVIRRQLLQELNLAEAMVNRLQTVGLRFCGSADQALPRLRGALPSDKRAFKALDELSELVSLLRIWRIDKNIYIDALMPPTESYHRDLFFQVYLRKENSPGSLSEGALLAVGGRYDYLFHQLWSSDYKGNPPTGVGTSLALETIIQNCPVDFKPNRNEASINILVCSRGGGGLLVERMELVAELWEENFKAEFVPTPDPSLTEQYEYANEHGIKCLVIITDTDFSLTGSVKVRHLEHKREKNVEKKNLVKFLSDAMATQFRNPSIWI* 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0437 1221 ProSiteProfiles Protein kinase domain profile. 416 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0437 1221 ProSiteProfiles RWD domain profile. 41 150 IPR006575 GO:0005515
Gso12g0437 1221 Gene3D Ubiquitin Conjugating Enzyme 28 155 IPR016135 -
Gso12g0437 1221 SUPERFAMILY UBC-like 36 147 IPR016135 -
Gso12g0437 1221 MobiDBLite consensus disorder prediction 297 319 - -
Gso12g0437 1221 Gene3D Bira Bifunctional Protein; Domain 2 758 1105 IPR045864 -
Gso12g0437 1221 Pfam Anticodon binding domain of tRNAs 1115 1213 IPR024435 -
Gso12g0437 1221 Pfam RWD domain 38 147 IPR006575 GO:0005515
Gso12g0437 1221 PANTHER EIF-2-ALPHA KINASE GCN2 20 1221 - -
Gso12g0437 1221 ProSitePatterns Protein kinases ATP-binding region signature. 422 446 IPR017441 GO:0005524
Gso12g0437 1221 CDD STKc_EIF2AK4_GCN2_rpt2 410 716 - -
Gso12g0437 1221 Coils Coil 958 978 - -
Gso12g0437 1221 MobiDBLite consensus disorder prediction 1 33 - -
Gso12g0437 1221 Gene3D - 1112 1211 IPR036621 -
Gso12g0437 1221 MobiDBLite consensus disorder prediction 216 238 - -
Gso12g0437 1221 Gene3D Phosphorylase Kinase; domain 1 404 532 - -
Gso12g0437 1221 Pfam Histidyl-tRNA synthetase 863 1098 IPR041715 -
Gso12g0437 1221 MobiDBLite consensus disorder prediction 303 319 - -
Gso12g0437 1221 SUPERFAMILY Class II aaRS and biotin synthetases 770 1100 IPR045864 -
Gso12g0437 1221 SUPERFAMILY Protein kinase-like (PK-like) 412 766 IPR011009 -
Gso12g0437 1221 ProSitePatterns Tyrosine protein kinases specific active-site signature. 571 583 IPR008266 GO:0004672|GO:0006468
Gso12g0437 1221 Pfam Protein kinase domain 416 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0437 1221 MobiDBLite consensus disorder prediction 1 16 - -
Gso12g0437 1221 SUPERFAMILY Class II aaRS ABD-related 1114 1211 - -
Gso12g0437 1221 Gene3D Transferase(Phosphotransferase) domain 1 535 729 - -
Gso12g0437 1221 PANTHER HISTIDYL-TRNA SYNTHETASE 20 1221 - -
Gso12g0437 1221 SMART RWD2001b 41 150 IPR006575 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0437 Gso-Chr12 3798551 3819298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0437 405 719 MAP Kinase Kinase Kinase AT1G63700 25.697 6.56e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Gso12g0437 Pkinase 1.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0437 K16196 - gmx:100797996 2397.85