Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0436 ATGAGCAAACAATTTTGCTATTATTATTGGTCAATATTCTACATTCTACATTTTTTTTTATGTGTAATATTTTGGTTGCTTTGTATCATGGGGTTCTCATTAAAACACCGATTAATCTACGGTTTCAATGTGAACCAATGTTCAACTAGGCTTCTATTTGAGCTGGTGATTTTGTCACACTTGTGGTTGCAAGTTACAAGCCTTGGTTCCATGTCATCCATTGCCATCTCTTACGGCGAAAAGGGTTCTGTGTTTTGTGGTTTGAAATCTGATGGCTCTCACACAGTGACATGTTATGGATCCAACTCAGCCATAATCTATGGAACACCAACACATTTTTCATTTCTTGGCCTAACAGCTGGAGATGGCTTTGTATGTGGTCTTCTAATGGGTTCTAATCAACCATACTGTTGGGGCAGCAGTGCCTACATTGAAATGGGAGTGCCTCAACCTATGATCAAAGGAGCACAGTACCTAGAAATCAGTGCCGGTGACTACCATGTTTGTGGCTTGAGGAAACCTATGACTGGAAGACACAGGAACATTTCCTTGGTTGATTGCTGGGGATACAACATGACCAAGAACTATGTGTTTGGTGCACAGATTCAATCAATCTCAGCAGGTTCTGAATTCAATTGTGGCCTTTTTTCTCAGAACAGGACTGTGTTTTGCTGGGGTGACGAAACTAATAGCTTAGTGATTAGCTTGATTCCTCATGACATGAGATTTCATAAAATTTCAGCTGGGGGGTACCATGTGTGTGGAATCTCAGAAGGGGTGAGCTCCAAAACTTTTTGTTGGGGGAGAAGCTTGAACCTTGAGGAAGAAATTTCAGTGTCACATGCTGGTCAAGGAAATGTTGATTTGGCACCAAATGACCCCATGCTTTCGGTAGTGGGAGGGAAGTTCCATGCATGTGGCATTAAGAGCTATGACCGTGGAGTGATTTGTTGGGGATTTATCATCAAACCAAGCACTCCATCTCCTAAAGGGATTAAGGTTTTTGAAGTTGCTGCTGGTGATTACTTTACTTGTGCAGTTCTTGCTGTGAAATCTCTTATGCCTTCATGTTGGGGTGTTGATTTTCCCACCTCTCTTCCTTTAGCTGTTTCACCAGGAATGTGCCAACCTGCTCCATGTGCTCCTGGCTCCTATGCCATTGATCAGCATAAGAGTCTTTGCAAGTCACCGGATTCTCGTGTTTGCATGAGGTGCAGTGGTGCTTGTCCTCCTGAAATGCATCTGAAGAGTGCATGCAATTTAGCATCTGATAGAGTGTGTGAATATAACTGTTCTTGTTGTTCTTCATCCGAATGCTTCTTGAACTGCTCCTCTTCATACTCCAATGCTGCTGCCGCCGAGAAGAAAAGTGAAAAATTTTGGGCTCTGCAGCTGCCAGTTCTCATTGCTGAGATTGCTTTTGCAGTTTTCGTAGTTAGTATTGTGTCAATAACTGCAGTGTTATACATCCGCTACAGGCTAAGAGATTGTGAGTGCTCAAAAGGGTCAATGGTGAAGAAACTTAATGGAAATTCTTCCCTCCAAAACGAGAACAAGGTGAGGCCAGACTTGGAGGAACTTAAGATCAGAAGGGCTCAAACGTTCACCTATGAGGAGCTTGAAACTGCAACCAGTGGATTCAAAGAAGAGTCCATAGTAGGGAAGGGAAGTTTTTCCTGTGTGTTCAAGGGAGTTTTGAAAGATGGGACAGTTGTTGCTGTAAAAAGGGCCATAGTGTCCCCCAACATGCAGAAGAATTCCAAAGAGTTTCACACAGAACTTGACTTGCTCTCAAGGTTGAACCACGCTCATTTGCTCAATCTTCTAGGGTATTGTGAAGAAGGTGGAGAGAGGCTTCTAGTGTATGAGTTCATGGCTCATGGCTCTTTGCACCAACACTTACATGCAACAAACCAAGTGTTGAGAGAACAGTTGGATTGGATAAGAAGGGTGACAATTGCAGTCCAAGCAGCACGTGGAATCGAATATCTGCATGGCTATGCTTGCCCTCCAGTGATTCACAGAGACATCAAGTCCTCAAACATCCTCATTGATGAAGAACACAATGCAAGAGTGGCTGATTTTGGTTTATCATTGTTAGGCCCTGCAGATAGTGGTTCCCCTTTAGCTGAACTCCCAGCTGGGACTCTTGGTTATCTTGATCCCGAGTACTATAGGCTTCACTACCTCACAACAAAATCTGATGTTTATAGCTTTGGTGTTCTCCTTTTGGAGATTCTAAGTGGTAGAAAAGCCATTGACATGCAATATGAAGAAGGCAACATAGTGGAATGGGCAGTGCCTCTTATCAAATCAGGAGACATAACCGCGATTTTGGACCCGGTTTTGAAGCCTCCTCCTGATCTTGAAGCATTGAAGAGAATAGCCAATGTGGCTTGTAAGTGTGTGAGAATGAGAGGGAAAGAAAGGCCCTCAATGGATAAAGTAACAACAGCTTTGGAGAGAGGTCTTGCACAGTTAATGGGAAGTCCATGCATTGAGCAGCCAATTTTGCCCACTGAGGTGGTTTTGGGAAGCAACAGATTGCACAAGAAGTCATCTCAAAGATCTTCAAACAGGTCAGTTTCTGAGACAGATGTGGCAGAAACTGAGGACCAAAGGTTTGAGTTTAGAGCACCCTCATGGATAACTTTCCCCAGTGTGACATCTTCTCAAAGGAGAAAGTCATCAGTGTCTGAGGCAGATGTTGATGGGAAGAACAATGCAGAAGGGAAGAACATGGGCAATGTTGGAGGGGGTGGTGATGTTTTGAGAAGCCTTGAGGAAGAGATTGGTCCTGCTTCTCCAAGAGAGAGGCTGTTCTTGCAGCACAACTTCTAA 2841 0.4365 MSKQFCYYYWSIFYILHFFLCVIFWLLCIMGFSLKHRLIYGFNVNQCSTRLLFELVILSHLWLQVTSLGSMSSIAISYGEKGSVFCGLKSDGSHTVTCYGSNSAIIYGTPTHFSFLGLTAGDGFVCGLLMGSNQPYCWGSSAYIEMGVPQPMIKGAQYLEISAGDYHVCGLRKPMTGRHRNISLVDCWGYNMTKNYVFGAQIQSISAGSEFNCGLFSQNRTVFCWGDETNSLVISLIPHDMRFHKISAGGYHVCGISEGVSSKTFCWGRSLNLEEEISVSHAGQGNVDLAPNDPMLSVVGGKFHACGIKSYDRGVICWGFIIKPSTPSPKGIKVFEVAAGDYFTCAVLAVKSLMPSCWGVDFPTSLPLAVSPGMCQPAPCAPGSYAIDQHKSLCKSPDSRVCMRCSGACPPEMHLKSACNLASDRVCEYNCSCCSSSECFLNCSSSYSNAAAAEKKSEKFWALQLPVLIAEIAFAVFVVSIVSITAVLYIRYRLRDCECSKGSMVKKLNGNSSLQNENKVRPDLEELKIRRAQTFTYEELETATSGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIVSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLHQHLHATNQVLREQLDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADSGSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVEWAVPLIKSGDITAILDPVLKPPPDLEALKRIANVACKCVRMRGKERPSMDKVTTALERGLAQLMGSPCIEQPILPTEVVLGSNRLHKKSSQRSSNRSVSETDVAETEDQRFEFRAPSWITFPSVTSSQRRKSSVSEADVDGKNNAEGKNMGNVGGGGDVLRSLEEEIGPASPRERLFLQHNF* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0436 946 ProSitePatterns Protein kinases ATP-binding region signature. 553 575 IPR017441 GO:0005524
Gso12g0436 946 Gene3D Phosphorylase Kinase; domain 1 505 624 - -
Gso12g0436 946 MobiDBLite consensus disorder prediction 888 937 - -
Gso12g0436 946 SUPERFAMILY Protein kinase-like (PK-like) 528 820 IPR011009 -
Gso12g0436 946 SMART serkin_6 547 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0436 946 SUPERFAMILY RCC1/BLIP-II 65 320 IPR009091 -
Gso12g0436 946 Gene3D - 114 374 IPR009091 -
Gso12g0436 946 Pfam Protein tyrosine and serine/threonine kinase 550 819 IPR001245 GO:0004672|GO:0006468
Gso12g0436 946 PANTHER RECEPTOR-LIKE KINASE 50 946 - -
Gso12g0436 946 MobiDBLite consensus disorder prediction 848 864 - -
Gso12g0436 946 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 50 946 - -
Gso12g0436 946 Gene3D Transferase(Phosphotransferase) domain 1 625 828 - -
Gso12g0436 946 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 379 427 IPR001368 GO:0005515
Gso12g0436 946 ProSitePatterns Serine/Threonine protein kinases active-site signature. 672 684 IPR008271 GO:0004672|GO:0006468
Gso12g0436 946 ProSiteProfiles Protein kinase domain profile. 547 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0436 946 MobiDBLite consensus disorder prediction 848 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0436 Gso-Chr12 3792547 3796244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0436 51 946 Receptor kinase-like Gene Family AT3G59420 68.252 0.0 1246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gso12g0436 PK_Tyr_Ser-Thr 4.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0436 - - gmx:100797455 1888.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0436 12 3792547 3796244 Gso11g1087 11 9718650 9722400 GST
Gso12g0436 12 3792547 3796244 Gso15g0268 15 2428970 2432182 PCT
Gso12g0436 12 3792547 3796244 Gso11g3541 11 51205169 51208864 PCT