Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0433 ATGTCCAATGAGTTTTCGACACGTATAGAGGGCATTCGGTGGTCCATATATGCCTCGCCTTACCCAAATCATTTCTTCTGTGTTCTCTCTGTAGCACGGAACAGAGGATCGAAAATAATCAGCCGCATCACACACCGTTTCCACCACGATCCAATTATGGAGGTTGAGATTGATGGCTCTGTTACTGTCGAAACAGTAGGAAATACTGCTATGGGTGAGGTCAGTAGCATAGCTGATGACAACAGAGAAGGTGGAAGTTCTGTTGAACCAAATGACAAACAAGATCAACATGATAACATGACTCAAGATTCCTCTGGAGGGATCACTATCCCAACTGCAATTCCCACAGTATCAGTTGTTTCAGTTGAAGAGCCCTATGTGGGTCAGGAGTTTGGGTCAGAAGCAGCAGCACATGCATTTTATAATGCTTATGCTACAGATGTTGGATTCATTGTACGTGTGAGTAAACTCTCGCGGTCAAGGCGTGATGGAACTGCTATTGGACGCACTCTTGTTTGCAACAAAGAGGGTTTCAGAATGGCTGACAAACGTGAAAAGATTGTGAGGCAAAGGGCTGAGACCAGGGTTGGTTGCAGGGCAATGATTATGGTGAGGAAACTTAGTTCTGGCAAATGGGTTATTGCAAAGTTTGTAAAGGAACACACACATCCGTTGACTCCTGGCAAAGGTAGAAGGGATTTCTACTATGAACAATATCCGACTGAACAAGATAAAATTCGGGAACTATCTCAGCAGTTGGCAACTGAGAAAAAGCGATCTGCGGCCTATAAAAGGCATCTTGAATTGATATTTGAGCAAATTGAAGAGCAGAACGAGAACCTTTCAAAGAAAATACAGCACATAGTAGACAGTGTGAAGGAGATGGAAGCCAAAGAAGAACATAGTAGACAGTGGGAAGGAGATGGAAGCCAAAGAAGAACATATTAG 948 0.4346 MSNEFSTRIEGIRWSIYASPYPNHFFCVLSVARNRGSKIISRITHRFHHDPIMEVEIDGSVTVETVGNTAMGEVSSIADDNREGGSSVEPNDKQDQHDNMTQDSSGGITIPTAIPTVSVVSVEEPYVGQEFGSEAAAHAFYNAYATDVGFIVRVSKLSRSRRDGTAIGRTLVCNKEGFRMADKREKIVRQRAETRVGCRAMIMVRKLSSGKWVIAKFVKEHTHPLTPGKGRRDFYYEQYPTEQDKIRELSQQLATEKKRSAAYKRHLELIFEQIEEQNENLSKKIQHIVDSVKEMEAKEEHSRQWEGDGSQRRTY* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0433 315 Coils Coil 246 298 - -
Gso12g0433 315 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 53 302 - -
Gso12g0433 315 MobiDBLite consensus disorder prediction 85 99 - -
Gso12g0433 315 MobiDBLite consensus disorder prediction 295 315 - -
Gso12g0433 315 Pfam FAR1 DNA-binding domain 140 226 IPR004330 -
Gso12g0433 315 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 53 302 - -
Gso12g0433 315 MobiDBLite consensus disorder prediction 72 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0433 Gso-Chr12 3768097 3771139 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gso12g0433 FAR1 7.1e-30 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0433 - - gmx:100777092 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0433 12 3768097 3771139 Gso11g1084 11 9690619 9693806 GST
Gso15g0267 15 2424825 2428097 Gso12g0433 12 3768097 3771139 PCT
Gso12g0433 12 3768097 3771139 Gso15g0267 15 2424825 2428097 PCT