Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0430 ATGAAAATTCAGTGCGATGTGTGTGAGAAAGCCCCGGCAACCGTGATTTGCTGCGCAGATGAGGCAGCTTTGTGTGCCAAATGTGACGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAGAGGCTTCTCCTTCAATCTTTATCTAACAAGCTTCCCAGATGTGACATATGTCAAGATAAGCCAGCTTTCATATTTTGTGTTGAGGACAGAGCACTCTTCTGTAAAGACTGTGATGAACCTATTCATTTAGCCAGTAGCCTTTCTGCAAACCACCAGCGCTTCCTTGCTACTGGTATCCGGGTGGCTTTGGGTTCTAATTGCACCAAAGGCAATGAAAAAGGTCACGTGGAACCATCTAAACCAAAAGCACAAGAAGTTCCTGCGAAAATTCCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCAGTTGATGACTTGTTGGAATTAACAGACTTTGAATCACCAGACAAAGTTCAGAAGCAATCCCTTGAGTTTGGAGAACTTGAATGGCTAGCAGATGTAGGCCTTTTTGGTGAACAGTTTCCTCATGAAGCTTTAGCGGCGGCTGAAGTTCCTCAGCTTCCAATGACTAGCAGTGTTGGCTCACACAAAGCCCCCAAATCCTTGTTGTCTTACAAAAAGCCTAGGATTGAAGTCCTAGATGAAGATGATGATGAGCACTTCACCGTACCAGATCTCGGATAA 717 0.4519 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQSLSNKLPRCDICQDKPAFIFCVEDRALFCKDCDEPIHLASSLSANHQRFLATGIRVALGSNCTKGNEKGHVEPSKPKAQEVPAKIPSQQVPSFTSSWAVDDLLELTDFESPDKVQKQSLEFGELEWLADVGLFGEQFPHEALAAAEVPQLPMTSSVGSHKAPKSLLSYKKPRIEVLDEDDDEHFTVPDLG* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0430 238 CDD Bbox1_BBX-like 57 98 - -
Gso12g0430 238 Pfam B-box zinc finger 52 94 IPR000315 GO:0008270
Gso12g0430 238 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Gso12g0430 238 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Gso12g0430 238 MobiDBLite consensus disorder prediction 113 133 - -
Gso12g0430 238 SMART bboxneu5 52 99 IPR000315 GO:0008270
Gso12g0430 238 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gso12g0430 238 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gso12g0430 238 Gene3D Classic Zinc Finger 1 98 - -
Gso12g0430 238 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 238 - -
Gso12g0430 238 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 238 - -
Gso12g0430 238 CDD Bbox1_BBX-like 5 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0430 Gso-Chr12 3748356 3751709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0430 1 162 Orphan Transcription Factor Family AT1G06040 69.231 7.33e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gso12g0430 zf-B_box 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0430 - - gmx:732574 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0430 12 3748356 3751709 Gso11g1082 11 9674858 9678063 GST
Gso15g0263 15 2405461 2408094 Gso12g0430 12 3748356 3751709 PCT
Gso11g3543 11 51226041 51228668 Gso12g0430 12 3748356 3751709 PCT
Gso12g0430 12 3748356 3751709 Gso15g0263 15 2405461 2408094 PCT
Gso12g0430 12 3748356 3751709 Gso11g3543 11 51226041 51228668 PCT