Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0427 ATGAGAAAAGAGGAAAAGAGAGGAGCATTGCAGAGGTGGGGAACCTGGAATGGAATCTCTGATCCATTTTGTGTGTTGAATTTGATTTTGTATTGTTATAGATTACAGATTTGGTGGGCAATGGATAGGGACAACAAATCTCCTCCACCTTCTTCTCTTTATGTGAAATCATCATCTTCATCCTTCAGCCACGACGACATAAGCGCCATGCCGGAGAATCCACCCAAGAACAGAGGCCACAGGCGCGCCCATTCCGAGATTATAACCCTACCGGACGACCTATCCTTCGACGCTGATCTCCTCCCCGACGACGACAACGACTTGCTCTCCCTCTACCTCCAATTCGATCAGCTCGATTCCTCTTCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCACAACAACATTAATGAAAGGTCAACTAGGGTTAGACACCAACACAGCCACTCCATGGATGGCTCCATCCACCCGGAGATGCTGCTCTCCGCCGCCGCCTCCGCCGCCGATGACGTCTCCGGTGGCATCGACACCAAAAAGGCTATGTCTGCTGACAAGCTTGCTGAGCTTGCCTTAGTTGATCCCAAGCGGGCTAAGAGGATATGGGCAAATAGACAGTCTGCTGCAAGATCAAAAGAAAGGAAGATGCGTTACATTTCCGAGCTTGAAAGGAAAGTGCAGACATTGCAAACTGAAGCAACATCCTTGTCTGCACAATTAACTCTTTTGCAGAGAGATACACATGGAATGACTGCTGAGAACAGTGAGTTGAAGTTGCGATTGCAAACCATGGAGCAACAGGTCCACTTGCAAGATGCATTAAATGATGCATTAAAAGAAGAAATTCAGCATTTGAAAGCACTGACTGGACAAGTTATGCCGAATGGAGGACCGGTTAATTTTGCTTCATTTGGTGGGGGGCAACAATTCTATCCCAACAATCAGGCTATGCACACTCTTTTAGCTGCACAAAAGTTTCAACAACTTCAAATTCATTCCCAAAAGCAGCAGCTGCATCAACTTCAGCAGCAACAGCAATTTCAGCATCAACTTCAGCAGCAACAACAGTTTCACCAGCAGCAACAACAGCTGCAACTGCAACAACAGCTGCAGCAGCAGCAACAGCAACAACAACAGCAGCAGCAACAGCAACAACAAACAGCAGCAACAGGAACAGTAACATCAACAAACGGGGGACATGAATAG 1203 0.4738 MRKEEKRGALQRWGTWNGISDPFCVLNLILYCYRLQIWWAMDRDNKSPPPSSLYVKSSSSSFSHDDISAMPENPPKNRGHRRAHSEIITLPDDLSFDADLLPDDDNDLLSLYLQFDQLDSSSLPPPPPPPPPHNNINERSTRVRHQHSHSMDGSIHPEMLLSAAASAADDVSGGIDTKKAMSADKLAELALVDPKRAKRIWANRQSAARSKERKMRYISELERKVQTLQTEATSLSAQLTLLQRDTHGMTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKALTGQVMPNGGPVNFASFGGGQQFYPNNQAMHTLLAAQKFQQLQIHSQKQQLHQLQQQQQFQHQLQQQQQFHQQQQQLQLQQQLQQQQQQQQQQQQQQQQTAATGTVTSTNGGHE* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0427 400 MobiDBLite consensus disorder prediction 121 135 - -
Gso12g0427 400 MobiDBLite consensus disorder prediction 50 67 - -
Gso12g0427 400 SMART brlzneu 191 255 IPR004827 GO:0003700|GO:0006355
Gso12g0427 400 CDD bZIP_plant_RF2 196 245 IPR044759 GO:0003700|GO:0006355
Gso12g0427 400 Gene3D - 194 247 - -
Gso12g0427 400 Coils Coil 260 280 - -
Gso12g0427 400 MobiDBLite consensus disorder prediction 119 153 - -
Gso12g0427 400 Coils Coil 358 386 - -
Gso12g0427 400 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 193 256 IPR004827 GO:0003700|GO:0006355
Gso12g0427 400 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 53 385 - -
Gso12g0427 400 SUPERFAMILY Leucine zipper domain 195 246 IPR046347 GO:0003700|GO:0006355
Gso12g0427 400 MobiDBLite consensus disorder prediction 376 400 - -
Gso12g0427 400 MobiDBLite consensus disorder prediction 138 152 - -
Gso12g0427 400 Coils Coil 211 245 - -
Gso12g0427 400 MobiDBLite consensus disorder prediction 49 82 - -
Gso12g0427 400 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 53 385 - -
Gso12g0427 400 Pfam bZIP transcription factor 195 249 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0427 Gso-Chr12 3727769 3732715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0427 39 322 bZIP Transcription Factor Family AT1G06070 62.102 1.20e-118 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso12g0427 bZIP_1 4.1e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0427 - - gsj:114377908 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0427 12 3727769 3732715 Gso11g1079 11 9650998 9656264 GST
Gso15g0259 15 2362207 2367593 Gso12g0427 12 3727769 3732715 PCT
Gso11g3546 11 51241167 51245667 Gso12g0427 12 3727769 3732715 PCT
Gso12g0427 12 3727769 3732715 Gso15g0259 15 2362207 2367593 PCT
Gso12g0427 12 3727769 3732715 Gso11g3546 11 51241167 51245667 PCT