Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0425 ATGCCGTTTCCGGCGAAACCAACGCGGGATTTCGACGAGTCGGCGAGTCCGTCGAACAACCTGTGGGTGGGGAATCTGGCGGCGGACGTCACCGACGCTGATCTGATGGAGCTCTTCGCCAAATACGGCGCACTCGACAGCGTGACTTCCTATTCCGCTCGCAGTTACGCTTTCGTGTTCTTCAAACGCGTCGAAGACGCCAAAGCCGCCAAGAACGCTCTCCAAGGAACCTCTCTCCGCGGCAGTTCCTTGAAGATTGAGTTTGCCAGACCGGCAAAGGCATGTAAACAACTTTGGGTGGGTGGTATTAGTCAGGCTGTTACAAAGGAAGATTTGGAAGCTGAATTTCAGAAATTTGGTAAAATTGAGGATTTTAAGTTCTTCAGAGACAGAAATACTGCATGTGTTGAATTTTTCAATTTGGAAGATGCTACTCAGGCCATGAAAATCATGAATGGGAAACGAATTGGCGGGGAGCATATTCGTGTTGACTTCCTTCGATCACAATCTACAAAAAGGGATCAGCTTGATTATGGGCAGTTTCAGGGAAAAAACTTGGGGCATACTGATGCTTATTCTGGACAGAAAAGACCATTGCATTCACAGCCTCCAATGGGGGGAAAAGGTGACAGTCAACCAAGTAATATTTTGTGGATCGGTTATCCACCTGCTGTTCAGATTGATGAACAAATGCTCCACAATGCCATGATTTTGTTTGGTGAAATCGAGAGAATCAAGAGTTTTCCTTTGAGAAATTATTCTATTGTTGAGTTTAGAAGTGTTGATGAAGCTCGACGTGCAAAAGAGGGCCTTCAAGGACGCCTTTTTAATGATCCTCGAATAACAATTATGTATTCTAGCAGTGACCTAGTACCTGGCAGTGATTACCCCAGCTTTTTTCCTGGAAGTAATGGACCAAGACCTGATGTATTGCTGAATGAGCATCCATTTCGACCATTACAAATGGATGTATTTGGTCATAATCGTCCAATGGTTCTAAATAATTTTCCTGGACAGTTACCACCTAGTGGTATTATGGGACTAAATGTACCAATGCGACCTTTTGGTAATCACGGTGGTGTTGAATCTGTTATTTCTGGCCCTGAGTTTAACGAGATTGATGCGCTCCATAAATTTCAGGATGGTAGCTCCAAGAGTAACATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACAGAGCACTAGGCTTCCTACCAGATCAACGTCTGGGGCATGGGATGTACTTGACAAAAACCATATTCCAAGAGATTCTAAACGTTCAAGGATAGATGGACCCTTGCCTGTTGCTGAAGCCCTATTTCCTTTTAGGAATATTGATGATCGGGGGTTAGCTCTAGAACAAGCATATGGGATTGATCCAGCTATTGATGGAAATGGTTCTGGTCCATATGTAAACATTCAAGGAAAGAGTCACCTTGGTCCAGTTAGCTCAAGGATTACAGCTGGAGTACATGATATTGTCCAACCTGATATTGATCATATTTGGCGCGGAGTTATTGCAAAAGGGGGAACTCCTGTTTGCCGTGCTAGATGTGTACCAATTGGGAAAGGAATTGGAACTGAGCTTCCTGGTGTTGTTGATTGCTCGGCTAGGACGGGATTGGATATACTCACAAAACATTATGCTGATGCAATTGGTTTTGATATTGTTTTTTTTCTGCCTGATAGTGAAGACGATTTTGCTTCATATACTGAGTTCCTACGCTATCTTAGTGCGAAAAATCGTGCTGGTGTTGCCAAATTTGTTGATAACACCACCTTATTCTTGGTGCCTCCTTCTGATTTTCTCACAAGAGTTTTGAAAGTCACTGGACCTGAGCGTCTATATGGTGTGGTTCTTAAGTTTCCACCAGTGCCAAGTAGTGCACCTATGCAACAGCCATCGCATTTGCCTGTACCGACAACTCAGTATATGCAACATATTCCTCCTTCACAGACTGAATATGGTTTGATTCCTGTTAAAGAGGAACAGGTTTTGCCAATGGATTATAACAGACCGTTGCATGAGGATTCTAAGCTTCCTGCTAAACCAGTCTATCCACCAGCAGGTGGGCCCCCTCCAGTTCATTCTGGGCCTCCCGATTATTCTACTAATAATACTGTTGCTGGGTCCCAAGCTGGAGTTGCATTAACACCTGAGCTTATTGCAACTTTAGCTTCTTTACTTCCTACAACTACACAATTACCTACCACTGATGGTGCCAAGTCAGCAGTAGGTTCTTCGACCATGAAGCTTCCATTTCCTCCCATGACACCAAATGATGGAAATCAATCTCATCAAATTGCAGATCAATCCACTCATCCTCCTCAACAGTTGAGGAACATGTATAACGTTCACAATGCTCCCTATCAGCCCCATCCACCATTATCTGCTCCTGCTGGCAATCCTGCTCAAGTGTCTGGCAGTTCTCATATCCAAGATACTGCTGCCAACATGCAGCAGCAGCAAGGTGCTGTTTCATCAAGACACATGCCTAATTTCATGATGCCTACTCAAAGTGGACAGGTAGCTGTATCCCCCCATGCCAGTCAGCATTACCAAGTTGAGGTCTCCCCCAGCAATCAGAAAGGCTTTGGAGTGGTGCAGGGAACAGATGCCTCTGCTTTATACAATTCTCAGGCTTTCCAGCAACCTAATAACAATTCTCAGGCTTTCCAGCAACCTAATAACAATTCTCAGGCTTTCCAGCAACCTAATAACAATTCTCAGGCTTTCCAGCAACTTAATAACAATTCTCTGGCTTTCCAGCAACCTAATAACAATTCTCAGGCTTTCCAGCAACCTAATAACAATTCTCAGGCTTTCCAGCAACCTAATAACAATTCTCAGGCTTTCCAGCAACCTAATAATTCTTTTGCCTTATCTAATCAAACTAATAGTGCTAATGCTTCACAGCAGCAAACTGCCATGCTGTATACAGTGGACCAGGTAAACTCGGACACCCCCAATCAGCAACTTCCTATGTTTGGAGTCAGTCAAGGACAAACAGAGGTGGAGGCTGATAAGAACCAGAGATACCAGTCAACGTTACAATTTGCTGCCAACCTTCTTCTCCAACTACAACAGCAACAGCAACAAGCCCCAGGAGGACATGGGCCAGGACAATGA 3132 0.4441 MPFPAKPTRDFDESASPSNNLWVGNLAADVTDADLMELFAKYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGTSLRGSSLKIEFARPAKACKQLWVGGISQAVTKEDLEAEFQKFGKIEDFKFFRDRNTACVEFFNLEDATQAMKIMNGKRIGGEHIRVDFLRSQSTKRDQLDYGQFQGKNLGHTDAYSGQKRPLHSQPPMGGKGDSQPSNILWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPLRNYSIVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSDLVPGSDYPSFFPGSNGPRPDVLLNEHPFRPLQMDVFGHNRPMVLNNFPGQLPPSGIMGLNVPMRPFGNHGGVESVISGPEFNEIDALHKFQDGSSKSNMGPNWKRPSPPAQSTRLPTRSTSGAWDVLDKNHIPRDSKRSRIDGPLPVAEALFPFRNIDDRGLALEQAYGIDPAIDGNGSGPYVNIQGKSHLGPVSSRITAGVHDIVQPDIDHIWRGVIAKGGTPVCRARCVPIGKGIGTELPGVVDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTRVLKVTGPERLYGVVLKFPPVPSSAPMQQPSHLPVPTTQYMQHIPPSQTEYGLIPVKEEQVLPMDYNRPLHEDSKLPAKPVYPPAGGPPPVHSGPPDYSTNNTVAGSQAGVALTPELIATLASLLPTTTQLPTTDGAKSAVGSSTMKLPFPPMTPNDGNQSHQIADQSTHPPQQLRNMYNVHNAPYQPHPPLSAPAGNPAQVSGSSHIQDTAANMQQQQGAVSSRHMPNFMMPTQSGQVAVSPHASQHYQVEVSPSNQKGFGVVQGTDASALYNSQAFQQPNNNSQAFQQPNNNSQAFQQPNNNSQAFQQLNNNSLAFQQPNNNSQAFQQPNNNSQAFQQPNNNSQAFQQPNNSFALSNQTNSANASQQQTAMLYTVDQVNSDTPNQQLPMFGVSQGQTEVEADKNQRYQSTLQFAANLLLQLQQQQQQAPGGHGPGQ* 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0425 1043 SUPERFAMILY RNA-binding domain, RBD 95 183 IPR035979 GO:0003676
Gso12g0425 1043 PANTHER RNA RECOGNITION MOTIF-CONTAINING 902 1043 - -
Gso12g0425 1043 PANTHER RNA RECOGNITION MOTIF-CONTAINING 4 905 - -
Gso12g0425 1043 CDD RRM3_Spen 98 167 - -
Gso12g0425 1043 MobiDBLite consensus disorder prediction 180 211 - -
Gso12g0425 1043 Pfam SPOC domain 498 614 IPR012921 -
Gso12g0425 1043 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 168 IPR000504 GO:0003723
Gso12g0425 1043 Coils Coil 1011 1031 - -
Gso12g0425 1043 MobiDBLite consensus disorder prediction 734 774 - -
Gso12g0425 1043 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 902 1043 - -
Gso12g0425 1043 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 4 905 - -
Gso12g0425 1043 SUPERFAMILY RNA-binding domain, RBD 6 92 IPR035979 GO:0003676
Gso12g0425 1043 CDD RRM3_Spen 21 90 - -
Gso12g0425 1043 MobiDBLite consensus disorder prediction 686 700 - -
Gso12g0425 1043 Gene3D - 94 207 IPR012677 -
Gso12g0425 1043 SMART rrm1_1 216 284 IPR000504 GO:0003723
Gso12g0425 1043 SMART rrm1_1 97 164 IPR000504 GO:0003723
Gso12g0425 1043 SMART rrm1_1 20 87 IPR000504 GO:0003723
Gso12g0425 1043 Gene3D - 5 93 IPR012677 -
Gso12g0425 1043 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 91 IPR000504 GO:0003723
Gso12g0425 1043 MobiDBLite consensus disorder prediction 382 410 - -
Gso12g0425 1043 MobiDBLite consensus disorder prediction 673 709 - -
Gso12g0425 1043 MobiDBLite consensus disorder prediction 922 972 - -
Gso12g0425 1043 MobiDBLite consensus disorder prediction 887 906 - -
Gso12g0425 1043 Gene3D - 208 297 IPR012677 -
Gso12g0425 1043 CDD RRM3_Spen 217 286 - -
Gso12g0425 1043 MobiDBLite consensus disorder prediction 759 774 - -
Gso12g0425 1043 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 161 IPR000504 GO:0003723
Gso12g0425 1043 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 84 IPR000504 GO:0003723
Gso12g0425 1043 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 281 IPR000504 GO:0003723
Gso12g0425 1043 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 288 IPR000504 GO:0003723
Gso12g0425 1043 SUPERFAMILY RNA-binding domain, RBD 193 292 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0425 Gso-Chr12 3707617 3719568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0425 20 187 Eukaryotic Initiation Factors Gene Family AT2G23350 27.273 1.76e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0425 - - gsj:114380101 2028.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0425 12 3707617 3719568 Gso11g1077 11 9623671 9634980 GST
Gso15g0258 15 2345415 2356692 Gso12g0425 12 3707617 3719568 PCT
Gso11g3547 11 51250454 51262194 Gso12g0425 12 3707617 3719568 PCT
Gso12g0425 12 3707617 3719568 Gso15g0258 15 2345415 2356692 PCT
Gso12g0425 12 3707617 3719568 Gso11g3547 11 51250454 51262194 PCT