Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0416 ATGGAAGACCATGTTTCCCCTGAGGGAAAGGAAGTTAGCTGTTGCGCACCTCCTGGGGCTCAGTTGGAGGAATCAACATCGGTAGATGGTGGAAAGAAAAATTCATCTTCAGAGGACATGTTTAGCAACTTCTCAGAGCTCATGAACTTTGATACCTATGCTGGCTGGAGTAATAGCCCATCCATGACTGATCTGAGTGTGGCTAATGTGTTTTCATTATTTTCCTCAGCGCCATATCCACCACCTGATGGATTGAATTTAGTGGAACAAAGCAATGGTTCATTCTTTATGACAGAAGATAGTGAATTTCACAATGGTATGGAAAGTTCTCCTAGTTGTGTTGAGAGAGTTATATTTCAGCAAATGGACATCCATCTTGGGTTCTTAGATGAAGCAAATGATTCAAATAACTTGGACTCAAAAGAAAAACTTAATGGCAAATCTCAGCAAGTTAATACCTCAGACATGTGCAATTACATAATCTCAAGGTCACCAGGTAGGTCGCTTGATGATAGAATGCTGAGGGCTTTGTCCTTCTTTATGGAATCAGCTGATGAGGGAATGTTGGCACAGGTGTGGGTGCCAACAAAGCATGGTGATGAATTCATCTTAAGCACAAGTCAACAACCGTATTTGTTAGATCCAAAGCTTGCAGGGTATCGTGAAGTGTCAAGGGCATTTACATTTTCTGCAGAAGGAAAGACAAGAACATGTCCTGGGCTTCCTGCTCGCGTGTTTATATCACATGTTCCTGAATGGACCTCCAATGTTGGTTACTACAATAAAACTGAGTATTTAAGGTTGGAGCATGCTAAGAATCACGAGATTCGTGGATCAATTGCTCTTCCTATATCTGATGTGCACTCTCAAGTGCCATGTGCTGTATTGGAACTAGTCACTACAAAGGAAAAGGCTAATTTTGACAGAGAATTAGAAATTTTTTCTCATGCACTCCAGCTTGTAAATTTAAGGACTTCAATGCCTCCACGACTTCTTCCTCAGTGTTTATCAAGTAACAAAAGAGTTGCTTTAACAGAGATAATTGATGTGTTACGTGCCATGTGTCATGCACATAGATTGCCACTTGCACTAACATGGATTCCTTGTTGCTACAGTGAGGGAATAAGAGATGAAACTGAGAGAATACGAATCAAAGAGGGTCATACAAGTTCTAATGAAAAATGTGTCCTATGTATTGAAGAATCAGCTTGCTATGTAAATGATGGAGGGGTAGGAGGATTTGTTCATGCATGCATTGAACATCATCTTGAGGAAGGGCAAGGTATAGCTGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTATACTGATGTGAAGACATATGATATTGGTGAATATCCCCTTGTTCATCACGCACGCAAATATAACTTGAATGCTGCAGTTGCAATTAGGCTAAGGAGTACCTATACCAATGGTGATGATTACATATTAGAATTCTTTCTGCCTGTCAATATGACAGGGAGTTCAGAACAGCAACTTTTATTGGACAATCTCTCAGGTACCATGCGGAGAATTTGTAAGAGTTTGAGGACAGTTTCAGATGCTGAGTTAACAGGAATAGATGGTTCCCAAGGTGGGTTTCCAAAGGAAAAAGTCTCAGGTTTTTTTCCAATGTCCAGGAGAAACTCTGAGATAGCATTCATAAATGGTGACCATGATTCGGTCCAGAAGATGTCCATGAAGACATCTAACATGAGAAATAATGGAACTGAAGCTGTTCATAGCCAGGCAATGAATGGATCAAGAAAGCAGGTTGAGAAAAAGAGAAGCACAGTGGAGAAGAATGTTAGTTTGAGTGTTCTCCAACAATACTTTTCCGGTAGTCTGAAGGATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTAAAAAGGATATGCAGGCAACATGGAATTTCAAGATGGCCATCCCGCAAGATAAATAAAGTGAACCGTTCTTTGAAGAAGATACAAACTGTGCTTGATTCTGTCCAGGGAGTGGAAGGAGGACTGAAGTTTGATCCTTATACTGGGGGGTTTATTGCCGGAGGATCAATCATGCAGGAAATTGATGCACATAAATATCTTGTGTTTCCTAAGAAAAGTTCTGTGAAAGATCCAAAGCCGGCAACACAAAAAACAGTCTCAGTAGCTCCAGCACCTGGAAGCACTAGGGAGAATTCTACAATTAAGTTGAATGATGATGAAAGTGTTTGTCTGGTGAGAAACAAGTTTGTGCACTCAAGAAATGTTCTTAACTCCAATAGCAGTAAGGGAGAATTGAAGAAAGACAATGTTTCTTCTGATGATTGTTGTGATGATTCAAAATCAATGGCCATGAATGATGGATCATGCCAGAAATCCTGCCTTTGGACCAAGACTCAGGATTGTCCTGAACAAACTTGTTCAATATCCTTGGTTACTGATGAGGTTGAAGTTGGTGTAGATAGGGTAGAAGGAGCTGATGAACATAACCATCCGACTTCTTCAAGCACTACACACTCATCCAATGGCTCTGGCTCAATGATGCATGGCAGCTCATCATGCTCTCAAAGCTTCGAGAAACAAAAGCATTCAAAAGTCAAGTCAAATTGTGTTGATAGTGGGTCAAAAATGATTGTGAAAGCTAGCTATAGGGGTGATACTATACGTTTCAAGTTTGATCCATCCTCAGGTTGTTTCCAGCTATATGAAGAAGTTGCAACAAGGTTCAAATTGCAAAATGGGTCATTCCAGCTCAAATATCTTGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACTCGGATTTGCAAGAATGTACAGAAATTTTGGGTGACATTGGCACACGTTTTGTGAAGTTTCTTGTCCGTGACGTGCCTTGTGTTTTTAGAAGCCGCGGAAGCAATAGTTGCTTCTTGTCAGATAGCTCATAG 2916 0.406 MEDHVSPEGKEVSCCAPPGAQLEESTSVDGGKKNSSSEDMFSNFSELMNFDTYAGWSNSPSMTDLSVANVFSLFSSAPYPPPDGLNLVEQSNGSFFMTEDSEFHNGMESSPSCVERVIFQQMDIHLGFLDEANDSNNLDSKEKLNGKSQQVNTSDMCNYIISRSPGRSLDDRMLRALSFFMESADEGMLAQVWVPTKHGDEFILSTSQQPYLLDPKLAGYREVSRAFTFSAEGKTRTCPGLPARVFISHVPEWTSNVGYYNKTEYLRLEHAKNHEIRGSIALPISDVHSQVPCAVLELVTTKEKANFDRELEIFSHALQLVNLRTSMPPRLLPQCLSSNKRVALTEIIDVLRAMCHAHRLPLALTWIPCCYSEGIRDETERIRIKEGHTSSNEKCVLCIEESACYVNDGGVGGFVHACIEHHLEEGQGIAGKALQSNHPFFYTDVKTYDIGEYPLVHHARKYNLNAAVAIRLRSTYTNGDDYILEFFLPVNMTGSSEQQLLLDNLSGTMRRICKSLRTVSDAELTGIDGSQGGFPKEKVSGFFPMSRRNSEIAFINGDHDSVQKMSMKTSNMRNNGTEAVHSQAMNGSRKQVEKKRSTVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYTGGFIAGGSIMQEIDAHKYLVFPKKSSVKDPKPATQKTVSVAPAPGSTRENSTIKLNDDESVCLVRNKFVHSRNVLNSNSSKGELKKDNVSSDDCCDDSKSMAMNDGSCQKSCLWTKTQDCPEQTCSISLVTDEVEVGVDRVEGADEHNHPTSSSTTHSSNGSGSMMHGSSSCSQSFEKQKHSKVKSNCVDSGSKMIVKASYRGDTIRFKFDPSSGCFQLYEEVATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLQECTEILGDIGTRFVKFLVRDVPCVFRSRGSNSCFLSDSS* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0416 971 ProSiteProfiles RWP-RK domain profile. 582 670 IPR003035 -
Gso12g0416 971 ProSiteProfiles PB1 domain profile. 871 953 IPR000270 GO:0005515
Gso12g0416 971 SUPERFAMILY CAD & PB1 domains 868 955 - -
Gso12g0416 971 Pfam PB1 domain 874 952 IPR000270 GO:0005515
Gso12g0416 971 MobiDBLite consensus disorder prediction 819 849 - -
Gso12g0416 971 MobiDBLite consensus disorder prediction 825 849 - -
Gso12g0416 971 Gene3D - 868 948 - -
Gso12g0416 971 PANTHER PROTEIN NLP8 5 968 IPR045012 GO:0003700
Gso12g0416 971 MobiDBLite consensus disorder prediction 1 38 - -
Gso12g0416 971 Pfam RWP-RK domain 602 650 IPR003035 -
Gso12g0416 971 CDD PB1_NLP 872 952 IPR034891 -
Gso12g0416 971 SMART PB1_new 871 953 IPR000270 GO:0005515
Gso12g0416 971 MobiDBLite consensus disorder prediction 703 727 - -
Gso12g0416 971 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 968 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0416 Gso-Chr12 3630531 3636777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0416 25 967 NLP Transcription Factor Family AT2G43500 50.208 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso12g0416 PB1 2.5e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0416 - - gmx:100793770 1895.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0416 12 3630531 3636777 Gso11g1070 11 9548784 9554732 GST
Gso15g0247 15 2236895 2245159 Gso12g0416 12 3630531 3636777 PCT
Gso11g3557 11 51345905 51353230 Gso12g0416 12 3630531 3636777 PCT
Gso12g0416 12 3630531 3636777 Gso15g0247 15 2236895 2245159 PCT
Gso12g0416 12 3630531 3636777 Gso11g3557 11 51345905 51353230 PCT