Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0414 ATGGCAGTGCTTATACCAAATGCTTTTGTGAGGTTGCCACAGTTACAAGGAAGGATCCCTGAGGATGTGATCCTGAGAAATGCTAGTGAGAGAGCGTGGCATGTCAAAACACGATATGTTGAAGAGAAATTATATTTTGATGATGGGTGGAGGGCTTTCCATCAAGAAAACTGCTTAGGACAAGCAGACTTTCTTGTCTTCAAGCATGAACGGAGAAATGAGTTCGTGGTACTAATCCTTCAATTATCAACACAGTGTCAAAAGCCTTTGGTAAAGATGGAGGAGGAGCAAGCAGCAACACAACTAGTTGAGGAGCCAGACAGCTCTTCCGATGATGATGATGAAGAGAGTGGAGAAGAATTCGGTGCTGGATTCAATCTTCAAAGTCATCATAGAAGAGCTTGCAAAAGGGAGACTGCATCAAGTTCCAACCCCAATGCTGAAGATCCTCTTCCACAATATGTATTTGATCCAGAAATCTGTATTCATCCGGAGAATCATTTTTTTAAAGCAAAGCTCTACAGAACTAGACCCAATGAATTGCATATTCCAGGAAATGCCATTCAAGAATTTTCCCTTACTCTTCCTGAAAAGATCACCCTTATATGTTGTCAACCCTGCCAGCGCAAGGATATTCCAATGAATGAATTGGGAGACTATCATCATAACTTGACACCCATCCGCATAAAGTATCAGGAAGTGACAGGAATAGTGTGTAGGTGGCAAGATCATAGAATATATATCAAGGGTTGGGCAAGCTTTTGTAGAAGGAATAAGATTGAAAGAAATGATACATGCTTCTGTGAAGTTATATCAGGGGAAGACCAAGTAGTAAAAACACTACGGGTGCATGTTGCTAGGAGGAGATGA 870 0.4126 MAVLIPNAFVRLPQLQGRIPEDVILRNASERAWHVKTRYVEEKLYFDDGWRAFHQENCLGQADFLVFKHERRNEFVVLILQLSTQCQKPLVKMEEEQAATQLVEEPDSSSDDDDEESGEEFGAGFNLQSHHRRACKRETASSSNPNAEDPLPQYVFDPEICIHPENHFFKAKLYRTRPNELHIPGNAIQEFSLTLPEKITLICCQPCQRKDIPMNELGDYHHNLTPIRIKYQEVTGIVCRWQDHRIYIKGWASFCRRNKIERNDTCFCEVISGEDQVVKTLRVHVARRR* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0414 289 PANTHER B3 DOMAIN-CONTAINING 5 285 - -
Gso12g0414 289 SUPERFAMILY DNA-binding pseudobarrel domain 5 81 IPR015300 -
Gso12g0414 289 MobiDBLite consensus disorder prediction 96 149 - -
Gso12g0414 289 Gene3D - 2 86 IPR015300 -
Gso12g0414 289 SUPERFAMILY DNA-binding pseudobarrel domain 163 285 IPR015300 -
Gso12g0414 289 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 5 285 - -
Gso12g0414 289 Pfam B3 DNA binding domain 3 80 IPR003340 GO:0003677
Gso12g0414 289 MobiDBLite consensus disorder prediction 106 120 - -
Gso12g0414 289 CDD B3_DNA 5 80 IPR003340 GO:0003677
Gso12g0414 289 Gene3D - 159 289 IPR015300 -
Gso12g0414 289 SMART B3_2 1 83 IPR003340 GO:0003677
Gso12g0414 289 ProSiteProfiles B3 DNA-binding domain profile. 1 83 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0414 Gso-Chr12 3618920 3620459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0414 2 287 B3 DNA Binding Superfamily AT3G06160 24.510 3.94e-17 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso12g0414 B3 4.5e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0414 - - gsj:114380279 588.571