Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0405 ATGCCGCACCCTTCTTTCCACAAGCTTCTTCTACCCTCCACTGTCCAACCCAACCAACAACTGAGGCTTCCAGATAATTTTATGAGGAAATATGGGGGTGAACTATTGCCAATTGTTACCCTCTCTGTTCCTGATGGTAGTGTCTGGCGTGTAGGATTGAAAAAGGCAGACAACAAGTATTGGTTCCTTGATGGTTGGAAAGAGTTTGTTAAACACTATTCAATTAGCATTGGATACTTGTTGGTATTCAAATACGAAGGAAAGTCATCTTTCAGTGTCCATATTTTTAATTTGGCTACCTCTGAGATAAACTATCAATCAGCCACGCGAAGCAGTAATGAAGGGCTTCACTTCACAAATCGTCTTAAATTATTTGAAGAAATGGAAGATGAAGATTCCATTGAAATCTCGGATTCATCACCTTCCCACCTTGCTCCCAGTTCATTGCAAAATCAAGCTCTTACTGGATCAGTAGATAAAATGATGCCTGGGAAGAGTTATACACCTCCAGCATTGCAGAATCTGTTCAATGGATCTAAACTTAATAGCATAAACTGGGGAGAGGGTGGTAATGCCCATTCTTCAAGAATTGCCAATTCACTAGATAATCGATTGACCAGAGACATAGGACTTCAGTTTAATGCAGTCGAGTTTAAAAGATCTACTGAAGAATTGAAATTGCGTGCTTCCATGGAGGAAAGGATGAAAAAAACTACAAGAAAGAAGCGAAAATCAGATGGCCAAGATCCCTCTGCTGAACACGAAGAGGAGGTAGAAATGCGCTTGAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTAACAGCAGAAGAAAGAGAGAGGGCCATCAATGCAGCAAAAGCATTTGAACCACCTAATCCTTTCTGTCGGGTTGTCCTGCGGCCATCCTATTTATATAGGGGATGCATAATGTATCTGCCATCCTGCTTTGCAGAAAAGCATTTGAATGGAGTTTCAGGGTTTATTAAACTTCAGATCTCTAATGGGAGACAGTGGCCTGTTCGCTGCCTCTATAGAGGAGGTAGAGCCAAGTTAAGCCAGGGGTGGTTTGAATTTTCATTAGAGAACAATTTAGGGGAAGGTGATGTCTGTGTGTTTGAGCTGCTTAGAATGAAAGAAGTAGTGCTGCAAGTTACTGTCTTTCGTGTTATTGAGGATGTGGGATTGTTGAGCCCTCCTTTGCAGCAGAACCAAAACATGAGCTCGGCTAAAATGCTGAACACTCCCTTGCAGCAACACCTCACTTCGACTAAAATGGTTAGAAATCAGCAGCAGGTTCATTCCTGA 1311 0.4172 MPHPSFHKLLLPSTVQPNQQLRLPDNFMRKYGGELLPIVTLSVPDGSVWRVGLKKADNKYWFLDGWKEFVKHYSISIGYLLVFKYEGKSSFSVHIFNLATSEINYQSATRSSNEGLHFTNRLKLFEEMEDEDSIEISDSSPSHLAPSSLQNQALTGSVDKMMPGKSYTPPALQNLFNGSKLNSINWGEGGNAHSSRIANSLDNRLTRDIGLQFNAVEFKRSTEELKLRASMEERMKKTTRKKRKSDGQDPSAEHEEEVEMRLRFYESASARKRTVTAEERERAINAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISNGRQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVTVFRVIEDVGLLSPPLQQNQNMSSAKMLNTPLQQHLTSTKMVRNQQQVHS* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0405 436 SUPERFAMILY DNA-binding pseudobarrel domain 2 97 IPR015300 -
Gso12g0405 436 ProSiteProfiles B3 DNA-binding domain profile. 297 392 IPR003340 GO:0003677
Gso12g0405 436 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 420 - -
Gso12g0405 436 CDD B3_DNA 4 97 IPR003340 GO:0003677
Gso12g0405 436 Gene3D - 274 395 IPR015300 -
Gso12g0405 436 Pfam B3 DNA binding domain 6 96 IPR003340 GO:0003677
Gso12g0405 436 Pfam B3 DNA binding domain 300 390 IPR003340 GO:0003677
Gso12g0405 436 CDD B3_DNA 295 390 IPR003340 GO:0003677
Gso12g0405 436 SMART B3_2 297 392 IPR003340 GO:0003677
Gso12g0405 436 SMART B3_2 6 99 IPR003340 GO:0003677
Gso12g0405 436 MobiDBLite consensus disorder prediction 242 257 - -
Gso12g0405 436 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Gso12g0405 436 Gene3D - 1 99 IPR015300 -
Gso12g0405 436 SUPERFAMILY DNA-binding pseudobarrel domain 290 390 IPR015300 -
Gso12g0405 436 MobiDBLite consensus disorder prediction 230 257 - -
Gso12g0405 436 PANTHER B3 DOMAIN-CONTAINING 1 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0405 Gso-Chr12 3545849 3549515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0405 1 396 B3 DNA Binding Superfamily AT3G18990 52.868 8.29e-134 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso12g0405 B3 1.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0405 - - gmx:100813285 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0405 12 3545849 3549515 Gso11g1058 11 9452779 9456566 GST