Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0404 ATGAGTACTGGTGCCCAGAGATACCCTGATTTCTTCAAAGTCTTCCTCCCAGAGAGGCACTCTGAGAGAATGTTACAAGGAAGGATCCCTGAGGATGTGATCCTGAGAAATGCTAGTGGGAGAGTGTGGCATGTCAAAACACGATATGTTGGAGAGAAATTATATTTTGATGATGGGTGGAGGGCTTTCCATCAAGAAAACTGCTTAGGCCAAGCAGACTTTCTTGTCTTCAAGCTTGAACGGAGAAATGAGTTCGTGGTACTAATCCTTCAATTATCAACACAGTGTCAAAAGCCTTTGGTAAAGATGGAGGAGGAGCAAGCAGCAACACAACTAGTTGAGGAGCCAGACAGCTCTTCCGATGATGATGATGAAGAGAGTGGAGAAGAATTCAGTGCTGGATTCAATCTTCAAAGTCATCATAGAAGAGCTTGCAAAAGGGAGACTGCATCAAGTTCCAACCCCAATGCTGAAGATCCTCTTCCAGAATATGTATTTGATCCACAAATGTGTATTCATCCGGAGAATCATTTTTTTAAAGCAAAGCTCTACAGAACTAGACCCAACGAATTGCATATTCCAGGAAATGCCATTCAAGAATTTTCCCTTACTCTTCCTGAAAAGATCACCCTTATATGTTGTCAACCCTGCCAGCGCAAGGATATTCCAATGAATGAATTGGGAGACTATCATCATAATTTGACACCCATCCGCATAAAGTATCAGGAAGTGACAGGAAGAGTGTGTAGGTGGCAAGATCATAGAATATATATCAAGGGTTGGGCAAGCTTTTGTAGAAGGAATAAAATTGAAAGAAATGATACATGCTTCTGTGAAGTTATATCAGGGGAAGACCAAGTAGTAAAAACACTACGGGTGCATGTTGCTAGGCGGAGATGA 900 0.4189 MSTGAQRYPDFFKVFLPERHSERMLQGRIPEDVILRNASGRVWHVKTRYVGEKLYFDDGWRAFHQENCLGQADFLVFKLERRNEFVVLILQLSTQCQKPLVKMEEEQAATQLVEEPDSSSDDDDEESGEEFSAGFNLQSHHRRACKRETASSSNPNAEDPLPEYVFDPQMCIHPENHFFKAKLYRTRPNELHIPGNAIQEFSLTLPEKITLICCQPCQRKDIPMNELGDYHHNLTPIRIKYQEVTGRVCRWQDHRIYIKGWASFCRRNKIERNDTCFCEVISGEDQVVKTLRVHVARRR* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0404 299 PANTHER B3 DOMAIN-CONTAINING 6 297 - -
Gso12g0404 299 SUPERFAMILY DNA-binding pseudobarrel domain 8 91 IPR015300 -
Gso12g0404 299 ProSiteProfiles B3 DNA-binding domain profile. 1 93 IPR003340 GO:0003677
Gso12g0404 299 MobiDBLite consensus disorder prediction 108 159 - -
Gso12g0404 299 MobiDBLite consensus disorder prediction 116 130 - -
Gso12g0404 299 Gene3D - 3 96 IPR015300 -
Gso12g0404 299 Pfam B3 DNA binding domain 14 90 IPR003340 GO:0003677
Gso12g0404 299 CDD B3_DNA 9 90 IPR003340 GO:0003677
Gso12g0404 299 Gene3D - 164 299 IPR015300 -
Gso12g0404 299 SUPERFAMILY DNA-binding pseudobarrel domain 173 295 IPR015300 -
Gso12g0404 299 SMART B3_2 11 93 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0404 Gso-Chr12 3540795 3543851 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0404 1 297 B3 DNA Binding Superfamily AT3G06160 24.843 1.32e-21 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso12g0404 B3 5e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0404 - - gmx:100810594 602.438