Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0394 ATGATGCCTCCTTCTCAGCCACCTCATTGGGCCCCATCTCCCACACCAATCCTCAGCAAGTCTTTCCTACCCCCGACGTCAAACTCGCCGGCGGTTGACTTCACTCCGCCCTTAATAGCAATGGTCGTCGTCGTCGCCGCCGCGTTTCTTGTCGTCACCTACTCCCGCCTCATCGCGCGCCACCTCAGACCACCCTTCCACCGCCTCCTCCGCCGCTTCCGACGCCGCCGCTTCCTCCCCTCCTCCGTCGGCGACCTCGAGTCCCTCCCCTACGATTCTCCCTTCGACGGACCGCACGTGTTCTCCCCCTACGGTTTGGACGAAACGGTTATTAAAACAATCCCGTTCTCGCTTTATACAGCGAAATACGACGCGCGTTTTGATGAGTCTCGCTACGACTGCGCCGTTTGCTTGCTCGAATTCGAAGACGAGGATTACGTAAGAACGCTTCCCGTTTGTTCACACACGTTCCACGTGGACTGCATCGACGCGTGGCTTCGCTCGCACGCTAACTGTCCTCTCTGCCGCGCTGGAGTTCTCTGCACCGATTCACCTTTCACTCCGATGATGGCCGCTAGAATCCGACCGAGCCTCGACGACGACACAATTCTCCACCGTATCAGTATAGATCCTCTCATCGATCTGCCGCCGCAGCCTGCGTCGGCGGTGGCTATATCCTCCGTGTCGGAGATTACTCCCTGCGTCGACGAGAACACTCCGAGGAGGAACCAGAACCATGCGAACGTTAACTCAGAGGATTGTTTTAGGGATTTTCTGCTGAAGAGGTCTTACTCGTTTGGATTTGAACGGAGTCTGGCGTCGGAGAGGATGGTGATGGAACCGGCGACGGCGTCGCCGTGGCGGTACCGGAGAGGGAGTAGTAGTTTCTGGAGCAAGAGGCCCTCGCCATTCGGATCATTGGGGAAGCCGAGGGTGTTTTCGTTCAGGTATTATAGAGGGATGAAGTCACCGTTCTTCCGGAGGAGGGGTTTTTTCCCGTTGTCGGAGTCGAGCGTGAGGTACGGCAGCGGGGGGAGCTCGTCGCGGCGGAGCAAGTCGATAGCGAGTCCGATGTTTCTGCGGTCCTCGGGGGTGGCAGCCGCGGCGGCGTTCTCGTCGAGCCGGCTGAGGTGCGGGGATCCCGAGGCGCTGCTGTCGCCGGAGAGGTTTAACCGGAGGTGA 1182 0.5914 MMPPSQPPHWAPSPTPILSKSFLPPTSNSPAVDFTPPLIAMVVVVAAAFLVVTYSRLIARHLRPPFHRLLRRFRRRRFLPSSVGDLESLPYDSPFDGPHVFSPYGLDETVIKTIPFSLYTAKYDARFDESRYDCAVCLLEFEDEDYVRTLPVCSHTFHVDCIDAWLRSHANCPLCRAGVLCTDSPFTPMMAARIRPSLDDDTILHRISIDPLIDLPPQPASAVAISSVSEITPCVDENTPRRNQNHANVNSEDCFRDFLLKRSYSFGFERSLASERMVMEPATASPWRYRRGSSSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSVRYGSGGSSSRRSKSIASPMFLRSSGVAAAAAFSSSRLRCGDPEALLSPERFNRR* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0394 393 SUPERFAMILY RING/U-box 118 181 - -
Gso12g0394 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 180 IPR013083 -
Gso12g0394 393 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Gso12g0394 393 Pfam Ring finger domain 133 176 IPR001841 -
Gso12g0394 393 SMART ring_2 134 175 IPR001841 -
Gso12g0394 393 CDD RING-H2_PA-TM-RING 133 176 - -
Gso12g0394 393 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 365 - -
Gso12g0394 393 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 365 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0394 Gso-Chr12 3461784 3464121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0394 27 393 C3H Transcription Factor Family AT3G18930 51.122 2.15e-97 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0394 - K19041 gmx:100795347 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0394 12 3461784 3464121 Gso11g1049 11 9349051 9351298 GST