Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0387 ATGGACGATTACGCGAGCAGCGACGAGGATTACCATTACGACTCCGATCAGGAGGACTCCGTCGAGGCCTACGAAAACGACGAGAATTACGCCTTGCTTTCTTCCAAGGGCCCCACTACTAAGGTGATTACAAAGGAATCACTGCTGGCTGCACAGAAGGAGGATTTGCGCAGAGTGATGGACATGCTATCGGTGAGAGAGCAACATGCTCGTACTCTGCTTATTTTTCATCGTTGGGATGTGGAGAATCTGTTTGAAGTGTATGTAGACAAGGGGAAATCATTTCTCTTTGCTGAAGCTGGTGTTAGTGTGGATGAACATCGTGACTCTGACTCACCTGTTCCTCCTGATTTCATGTGCAACATTTGTATGGATGAAGTTCCTAGTAGCAAAACAACGAGAATGGACTGCGGTCACTGCTTTTGCAACGGCTGTTGGATAGAGCATTTTATTGTCAAGATAAATGAGGGTCAAAGTAAGCGCATTAGATGCATGGAACACAAGTGCAATTCCATATGTGATGAAGCTGTTGTAAGAACTCTACTCAGTAGAGAGCACTCTCATATGGCTGAGAAATATGAACGCTTTCTGCTTGAATCTTACATTGAAGACAATAAGAGAGTTAAATGGTGTCCCAGCACACCTCATTGTGGGAATGCAATACGGGTTGAGGATGATGAACTGTGTGAGGTAGAATGTTCATGTGGTGTACAATTTTGTTTTAGTTGTTTGTCAGAAGCACACTCCCCTTGTTCATGTCTGATGTGGGAGCTTTGGGCTAAGAAGTGTCGAGACGAATCAGAAACTGTTAATTGGATAACTGTTCATACAAAACCATGTCCAAAGTGTCACAAACCAGTGGAGAAGAATGGTGGCTGTAACTTGGTTAGCTGTATCTGTGGCCAAGCTTTTTGTTGGTTGTGTGGTGGAGCTACCGGCCGAGAGCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAAGAGCAAGAAAAAACAGCTGAACGTGCAAAGAGGGATCTATATCGGTATATGCACTATCATAACCGGTATAAAGCTCACACAGACTCCTTTAAGATTGAAAGTAAACTGAAAGAGACTATACAAGGGAAGATTTCCATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTTTTCAGATCTAGGCGAGTCCTATCATATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGATGAAATGACAGACGCTCAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAACAGCTTGAAGCAAATGTTGAAAAGCTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTTCAGATGACAAGGTTGTTGAGATAAGGATGCAGATACTCAACCTTTCTACAATTATTGACAAACTTTGTCAAAAAATGTATGAATGCATCGAGAATGATCTATTGGGTTCTCTCAATCTTGGCATTCATAGTATTGCTCCATACAAGTCAAAGGGCATTGAGAGGGCATCAGAACTTTCAGTTTGCTGGAACAACAAAGTCAATAATACTGGTGTAACAGAAGAACTTGATCGACCATCTGGATCAGGGAGTTCAGAGGATAGTGGATGCTCTTCTCGTAAGCGTCCTAGAAAAGAGGGTCTTGGAGGAGGTGGTTTTTTTGATCTAAACTTGCCAGCAGAGTTTGTAGACAGAAATTGA 1743 0.4182 MDDYASSDEDYHYDSDQEDSVEAYENDENYALLSSKGPTTKVITKESLLAAQKEDLRRVMDMLSVREQHARTLLIFHRWDVENLFEVYVDKGKSFLFAEAGVSVDEHRDSDSPVPPDFMCNICMDEVPSSKTTRMDCGHCFCNGCWIEHFIVKINEGQSKRIRCMEHKCNSICDEAVVRTLLSREHSHMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGVQFCFSCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKIESKLKETIQGKISISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKDEMTDAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDDKVVEIRMQILNLSTIIDKLCQKMYECIENDLLGSLNLGIHSIAPYKSKGIERASELSVCWNNKVNNTGVTEELDRPSGSGSSEDSGCSSRKRPRKEGLGGGGFFDLNLPAEFVDRN* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0387 580 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 514 IPR031127 GO:0004842|GO:0016567
Gso12g0387 580 MobiDBLite consensus disorder prediction 1 20 - -
Gso12g0387 580 ProSiteProfiles TRIAD supradomain profile. 116 330 IPR044066 -
Gso12g0387 580 SMART ibrneu5 191 253 IPR002867 -
Gso12g0387 580 SMART ibrneu5 261 326 IPR002867 -
Gso12g0387 580 SUPERFAMILY RING/U-box 116 203 - -
Gso12g0387 580 Gene3D - 249 496 - -
Gso12g0387 580 SUPERFAMILY RING/U-box 261 318 - -
Gso12g0387 580 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 514 - -
Gso12g0387 580 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 206 IPR013083 -
Gso12g0387 580 SUPERFAMILY RING/U-box 191 259 - -
Gso12g0387 580 Pfam IBR domain, a half RING-finger domain 191 253 IPR002867 -
Gso12g0387 580 MobiDBLite consensus disorder prediction 533 550 - -
Gso12g0387 580 ProSiteProfiles Zinc finger RING-type profile. 120 168 IPR001841 -
Gso12g0387 580 Pfam Ariadne domain 330 580 IPR045840 -
Gso12g0387 580 MobiDBLite consensus disorder prediction 533 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0387 Gso-Chr12 3404944 3408725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0387 60 554 ARIADNE family AT2G16090 69.138 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0387 K11968 - gmx:100783343 1177.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0387 12 3404944 3408725 Gso11g1038 11 9280020 9283828 GST