LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso12g0364	ATGACAGAGTCGGCAAGGCCAAGTGTGAGTTTGAAACTTGTTGTGTTAGTAGTTATTCTAGTCGTCTCCGCGTTGCTGATTCTGCTTCTGATTTTCTTCCTCTGCTTCCGCAAGACGCGGAACCTGGTGGCCAAACACAGCTCAGGGAGCATCCCTCTGGTGTCCAAGGAGATCACCATGGTCAAGGCCTCGGATCCGAAGAAGATGGAGGAGGCGGAGGTCAAGGTTGAAATTGGTGGAGCCCAGCACCACCGAAGCAGCGAACTAGTGTCGGTGGAGGATCCCGATATAGGGTGGGGCCGCTGGTACACCATTTGGGAAGTGGAACTCGCCACGCGCGGGTTTGCGGAAGGGAATGTTATTGGAGAAGGAGGCTATGCCGTTGTGTACAGAGGTGTTCTGCACGATGCTTCCGTCGTGGCTGTCAAGAATCTTCTGAACAACAAGGGTCAAGCTGAGAAGGAGTTTAAAGTGGAGGTTGAAGCTATTGGAAAAGTGAGGCATAAAAATTTGGTTCGTTTGGTAGGATATTGTGCAGAAGGTGCTCGAAGGATGCTTGTTTATGAGTATGTTGACAACGGAAACTTGGAACAATGGCTGCATGGTGATGTAGGACCAGTTAGCCCCTTGACATGGGATATTCGAATGAGAATTGCTATTGGGACTGCAAAAGGGTTAGCCTATTTGCATGAAGGTTTAGAGCCCAAAGTTGTGCACCGGGATATAAAATCCAGTAACATTCTTTTAGATAAAAACTGGAATGCCAAAGTATCAGATTTTGGACTAGCCAAGCTCTTAGGATCTGAGAAATCCCATGTGACTACGCGTGTAATGGGAACATTTGGATATGTTGCACCAGAGTATGCAAGCTCGGGTATGCTTAATGAGCGCAGTGATGTGTATAGCTTTGGAGTTCTTCTCATGGAGATAATCACAGGAAGAAGCCCCATTGATTATTCAAGACCACCCGGAGAGATGAATTTGGTAGATTGGTTTAAGGCAATGGTAGCAAGTCGTCGCAGTGAGGAGCTAGTTGATCCTTTAATTGAGATTCCTCCCCCTCCAAGATCTTTGAAGAGAGTTTTATTGATTTGTCTGCGCTGTATAGACATGGATGTCGTTAAGCGACCAAAGATGGGTCAAATTATTCATATGCTTGAGACAGATGATTTCCCCTTTCGTTCTGAGCTACGTTCAGTTAGAGAAAAAGATCCTGTGCCTTCTCATGCAGATGTTTCCATTAAAGTTCCTTATCCACCAACAAAGCATGCAGAAACCGTAGAAAAATCAAGATGGAGATAA	1302	0.4593	MTESARPSVSLKLVVLVVILVVSALLILLLIFFLCFRKTRNLVAKHSSGSIPLVSKEITMVKASDPKKMEEAEVKVEIGGAQHHRSSELVSVEDPDIGWGRWYTIWEVELATRGFAEGNVIGEGGYAVVYRGVLHDASVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVRLVGYCAEGARRMLVYEYVDNGNLEQWLHGDVGPVSPLTWDIRMRIAIGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKNWNAKVSDFGLAKLLGSEKSHVTTRVMGTFGYVAPEYASSGMLNERSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKAMVASRRSEELVDPLIEIPPPPRSLKRVLLICLRCIDMDVVKRPKMGQIIHMLETDDFPFRSELRSVREKDPVPSHADVSIKVPYPPTKHAETVEKSRWR*	434

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso12g0364	433	ProSiteProfiles	Protein kinase domain profile.	115	394	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gso12g0364	433	MobiDBLite	consensus disorder prediction	402	433	-	-
Gso12g0364	433	SMART	serkin_6	115	393	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gso12g0364	433	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	237	249	IPR008271	GO:0004672\|GO:0006468
Gso12g0364	433	Gene3D	Phosphorylase Kinase; domain 1	74	190	-	-
Gso12g0364	433	Gene3D	Transferase(Phosphotransferase) domain 1	191	398	-	-
Gso12g0364	433	PIRSF	TyrPK_CSF1-R	118	208	-	-
Gso12g0364	433	PIRSF	TyrPK_CSF1-R	206	391	-	-
Gso12g0364	433	PIRSF	TyrPK_CSF1-R	1	40	-	-
Gso12g0364	433	PANTHER	OS01G0323000 PROTEIN	1	433	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso12g0364	Gso-Chr12	3196140	3200270	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso12g0364	12	389	Trihelix Transcription Factor Family	AT1G70460	41.457	7.09e-94	296

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-V	Gso12g0364		PK_Tyr_Ser-Thr	1.8e-47	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso12g0364	-		-	gmx:100786349	818.535

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso12g0364	12	3196140	3200270	Gso11g1010	11	9009055	9013390	GST

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