Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0358 ATGGCTTCTGCAGATGTTGAGTACCGTTGCTTTGTCGGTGGGCTCGCTTGGGCCACTGACGACCATGCCCTCGAGAGAGCCTTCTCTCAGTACGGCGAAATCGTTGAAACGAAGATTATCAACGATCGTGAGACTGGCAGATCCAGGGGTTTTGGATTTGTGACCTTCGCCTCGGAGCAGTCCATGAAAGATGCGATCGGAGCGATGAATGGACAGAACTTGGACGGCCGTAATATCACTGTCAATGAAGCTCAGTCCCGCGGTGGCGGCGGCGGCGGCGGAGGAGGAGGATACAATCGTGGTGGCGGTGGATATGGTGGTCGTAGTGGCGGTGGCGGTGGCGGTGGTGGATACCGTAGCCGTGACGGTGGTTATGGCGGTGGCTATGGTGGTGGTGGTGGTGGTGGTTATGGCGGTGGCAGAGACCGTGGTTACTCTCGTGGTGGTGATGGTGGTGATGGAGGCTGGAGAAACTAA 477 0.5744 MASADVEYRCFVGGLAWATDDHALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQSMKDAIGAMNGQNLDGRNITVNEAQSRGGGGGGGGGGYNRGGGGYGGRSGGGGGGGGYRSRDGGYGGGYGGGGGGGYGGGRDRGYSRGGDGGDGGWRN* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0358 158 SMART rrm1_1 9 82 IPR000504 GO:0003723
Gso12g0358 158 MobiDBLite consensus disorder prediction 82 158 - -
Gso12g0358 158 PANTHER GEO13361P1-RELATED 1 158 - -
Gso12g0358 158 Gene3D - 2 118 IPR012677 -
Gso12g0358 158 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 158 - -
Gso12g0358 158 SUPERFAMILY RNA-binding domain, RBD 8 96 IPR035979 GO:0003676
Gso12g0358 158 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Gso12g0358 158 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0358 Gso-Chr12 3159956 3160961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0358 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 35.443 7.22e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0358 - K13195 gmx:547560 173.711