Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0356 ATGTTGCATTGTCTCAACACTTCCTGTTCGGACATCACAGTCTTGGAAAGACAACGGGAAGCAACCATCAAGTGCCAGAACCACCAACCACCCTACTTAACGGACTTTAACGTCGTCTTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCTCATAGTCAGGGCTTGCTCATGATGTGCTCGGATTCCTCGCTCGGCCAGGTCCTAACTCACTCCGTCAAACCCGACCCGGGCGTCTGGCCCGAATTCGGTTTTCTACCCGCCATTTCGAGAACTTGTAGCAGAGACGGAGACTTGGTTTCGCCCAAGGAAAACATGGCCAGTGGGAAAGAAAATGCTAAGAAGAGAAAGCCTCAGAACTCCAAGGTTGTTGCGGAGATTGATAATAACAAGGACAAGGACAAGAGAGTCAAAGTAACTGGCGAGGAAGGAGAATCCAAAGTAACCGAGCACCATACCAGAAACAAGAATGCCAAATCCAACGCAAATAAGAACAACAGAGAAACCTCTGCGGACACTTCCAAAGGCTCCGAGGTTCAAAATCAGAAACCAGACTACATTCATGTCCGAGCGCGTCGTGGACAAGCCACGGATAGTCATAGCTTAGCTGAAAGAGTAAGGAGGGAGAAGATTAGCGAGAGAATGAAGTATTTGCAAGATTTAGTACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACATTGACGAACTGTTTGCCAAAGAGGTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATAGGGATTCCCTCAGATATGAGTATTAGTAACAACCCTTCGTATCTTCAGTTCAATTCAGCGCAGCAACTTGTATCGTGCTGTGGTGGATTAATAAACAGCATGGGAATAAGCCCTCCCAACATGGGACTCCGAACGAACATTATTAGTACTAGCACTGTACCTTTGCCCGAAACTTTTCTTGACTCTTCCTGTTTCGCTCAAATTCTACCCTCCTCAAATTGGGAAGGTGGTGATTTCCAAAGCCTTTACAACGTTGCTTTTGATCAAGGGCGAACAGCATCTTTTCCCCCTCAGCCATTTACAGGTCTAGTTGAAGCTAGCAATCTAAAAATGGAGATGTAA 1215 0.4519 MLHCLNTSCSDITVLERQREATIKCQNHQPPYLTDFNVVFPSSSSSSSSSSSSSSSHSQGLLMMCSDSSLGQVLTHSVKPDPGVWPEFGFLPAISRTCSRDGDLVSPKENMASGKENAKKRKPQNSKVVAEIDNNKDKDKRVKVTGEEGESKVTEHHTRNKNAKSNANKNNRETSADTSKGSEVQNQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKVAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELFAKEVFPSCAQSFPNIGIPSDMSISNNPSYLQFNSAQQLVSCCGGLINSMGISPPNMGLRTNIISTSTVPLPETFLDSSCFAQILPSSNWEGGDFQSLYNVAFDQGRTASFPPQPFTGLVEASNLKMEM* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0356 404 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 105 385 IPR024097 GO:0006355
Gso12g0356 404 SMART finulus 206 256 IPR011598 GO:0046983
Gso12g0356 404 MobiDBLite consensus disorder prediction 164 186 - -
Gso12g0356 404 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 105 385 - -
Gso12g0356 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 198 269 IPR036638 GO:0046983
Gso12g0356 404 CDD bHLH_AtBPE_like 190 275 - -
Gso12g0356 404 MobiDBLite consensus disorder prediction 113 162 - -
Gso12g0356 404 MobiDBLite consensus disorder prediction 99 191 - -
Gso12g0356 404 Gene3D - 197 271 IPR036638 GO:0046983
Gso12g0356 404 Pfam Helix-loop-helix DNA-binding domain 204 251 IPR011598 GO:0046983
Gso12g0356 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 200 250 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0356 Gso-Chr12 3128291 3131218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0356 91 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 47.674 6.44e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso12g0356 HLH 2.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0356 - - gmx:100815751 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0356 12 3128291 3131218 Gso11g1000 11 8928850 8931953 GST