Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0334 ATGAAGGAAAAGAGAGACTTTTCTGAATTTGTGTCAGAATTAATAGTTCTGGCTGATGAGGTTGCCTCATTTGCTAAGAATCCTGAAATTGAGATAGTAGAGGATGCTTTTACTGAGTTTGCCATGTTGGTTGAGAAATTTGCTCCAATCTTGAATGATTTGAGAGACAAAAGCAAAATTATGGACAAGTCAGCTATCAGAAAGTCGTTGGAATCTCTTATGAATGAGCTTACCCGGGCTAAAGCTTTGATCAGAAGCTCCTCTTTGAAAGAGCGCATCAAACGAATTGAGGGCATAGCACATGATCTCGGTCGATCATTAGGCATGCTGCGTGTGGCAAGCCTTGAAGTGTCCATAGATTTTAGAGAAAAGATTGGTACATTACAAAAAAAGCTGATGAATGTGAGATTTGGTGGGAATACGAGTCTAACTTCAAGTTCAATATCAACATTTGTCAATGAAGAAAAGGTGGGAGGGGAAATAGAACAGGAGATAAATAATGTTACTGGAGATGATGTTTTACTACACCTCAAGAATGGTGATGCTGAAGAATTTGCAGTTGCACTCTTAAGGCTAAAAAAGTTCATCAGGGGTGGAAAACTGGATAGCGGTTTAATTAACGTGGAAGCTGCTGTTTCCATTCTTTTTAATCGTCTATTTTCATGTAAGACAGGCAATAGATTGACAATCATTCAATTGCTAAGAAGTGTTGCTTTGCAAAATGATGAGATGAAGGAGAAGATGACAAAGAATGAGTTATTATCAGCAGTGGTGAAATCTCTAACAAGAGACACTGAAGAGAGGAGGGAATCAGTGGGACTGTTGCTAGAACTCTCTGACCTTCCTGCAGTTAGACGGAAGATTGGAAGAATTCAGGGGTGTATTGTTATGTTAGTTTCTATCCTTAATGGAGTTGATCCTGTTGCTTCACGTGATGCAGCAAAGTTGTTGGATATATTATCAAATAATACTCAGAATGCACTTCTTATGGCTGAGGCTGGTTACTTTGGGCCACTAGTGCAGTATTTGAATAAAGGTTCTGACATGACCAAGATCCTCATGGCAACAACACTTTCTAGGCTGGTGCTCACTGATCATAGCAAACTTACCCTTGGACAAGATGGGGCAATTGAGCCCCTTGTGAGAATGTTCAATTCTGGAAAACTTGAGTCCAAGTTATCAGCTCTAAATGCACTGCAAAATCTTTCCAGCTTGACAGAAAATGTGGAACGCTTGATCAAAACTGGAATTGTAGGATCTTTGCTACAACTTCTTTTCTCGGTAACATCTGTGCTCATGACTCTACGGGAGCCTGCATCAGTTATCCTTGCAAGAATTGCTGAGTCAGAAACTGTTCTTGTCAATAAAGGTGTCGCTCAGCAGATGCTCTCACTTTTGAATCTTTCCAGCCCTGTGATTCAAGGTCATCTATTAGAAGCTCTAAATAGCATTGCTTCCCATCCTTGTGCCTCCAAAGTGAGAAGCAAAATGAAGGACAAAGGTGCACTTCAGCTAATTTTACCCCTTCTGAAGGAAACAAAAATGAAAATAAGGAGCAAGGCATTGAATTTGCTATATACTCTCTCCGAAGATCTAACAGATGAGTTGACAGCACATTTTGATGAAACGCATCTTTTTGACATTGTTAACATTGTCTTATCATCAACATCAGATAGCGAAAAGGCTGCTGCTGTTGGCATACTGAGTAATCTTCCTGTTAGTGATAAAAAAGTGACAGATGTACTGAAGAGAGCGAATTTGTTGCCCGTTTTGGTATCCATTATGGATTCAGGCACGAGAAGTAACTCACCAGCAAAAAGTATCTTAATGGAGAGTATTGCAGGCGTTGCAATCCGGTTCACAAGCTCCTCCGACAAGAAATTGCAACTTCTTTCAGCACAACATGGGGTGATTCCTTTGCTTGTAAAACTGCTCTCAAGTGGTTCAGCAATCACAAAATTCAAAGCCGCAACCGCTCTTGCTCAACTATCACAGAATTCTCCGTCTCTTAGGCGGTCTAGGAAGTCGAGGTGGTTGTGTGTTGCTCCCTCAGTGAATGCATATTGTGAAGTTCATGATGGTTATTGCTTTGTTAGCAGCACATTTTGTCTGATCAAGGCAGGAGCTGTTTCTCCCCTTATCCAAATATTGGAAGATAAGGATTGGGAAGCAGTGGAAGCTGCTCTGAATGCCCTTTCAACTCTATTGCAAGATGAAATCTGGGAAGGTGGTGCCAATTGCATAGCCAAATTGTCAGGTGTAGAAGCTATTGTAAATGTATTAGAAGCAGGTGATGTGAAGGTTCAAGAAAAAGCGCTATGGATGTTGGAGAGAATATTCAGGGTTGAAGAACACAGAATGAAATATGCAGAATTCGCCCAGATGGTTCTTATTGATATGGCACAGAGGAGTGATTGTAGATTGAAGTCTACAGTTGCAAAAGTCTTAGCAGTGCTGGAGCTGCTACTAGTTCAATCAAGTTATTTCTGA 2490 0.4064 MKEKRDFSEFVSELIVLADEVASFAKNPEIEIVEDAFTEFAMLVEKFAPILNDLRDKSKIMDKSAIRKSLESLMNELTRAKALIRSSSLKERIKRIEGIAHDLGRSLGMLRVASLEVSIDFREKIGTLQKKLMNVRFGGNTSLTSSSISTFVNEEKVGGEIEQEINNVTGDDVLLHLKNGDAEEFAVALLRLKKFIRGGKLDSGLINVEAAVSILFNRLFSCKTGNRLTIIQLLRSVALQNDEMKEKMTKNELLSAVVKSLTRDTEERRESVGLLLELSDLPAVRRKIGRIQGCIVMLVSILNGVDPVASRDAAKLLDILSNNTQNALLMAEAGYFGPLVQYLNKGSDMTKILMATTLSRLVLTDHSKLTLGQDGAIEPLVRMFNSGKLESKLSALNALQNLSSLTENVERLIKTGIVGSLLQLLFSVTSVLMTLREPASVILARIAESETVLVNKGVAQQMLSLLNLSSPVIQGHLLEALNSIASHPCASKVRSKMKDKGALQLILPLLKETKMKIRSKALNLLYTLSEDLTDELTAHFDETHLFDIVNIVLSSTSDSEKAAAVGILSNLPVSDKKVTDVLKRANLLPVLVSIMDSGTRSNSPAKSILMESIAGVAIRFTSSSDKKLQLLSAQHGVIPLLVKLLSSGSAITKFKAATALAQLSQNSPSLRRSRKSRWLCVAPSVNAYCEVHDGYCFVSSTFCLIKAGAVSPLIQILEDKDWEAVEAALNALSTLLQDEIWEGGANCIAKLSGVEAIVNVLEAGDVKVQEKALWMLERIFRVEEHRMKYAEFAQMVLIDMAQRSDCRLKSTVAKVLAVLELLLVQSSYF* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0334 829 SUPERFAMILY ARM repeat 174 425 IPR016024 -
Gso12g0334 829 SUPERFAMILY ARM repeat 341 784 IPR016024 -
Gso12g0334 829 Coils Coil 395 415 - -
Gso12g0334 829 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 375 417 IPR000225 GO:0005515
Gso12g0334 829 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 829 - -
Gso12g0334 829 Gene3D - 188 491 IPR011989 -
Gso12g0334 829 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 2 829 - -
Gso12g0334 829 Gene3D - 684 825 IPR011989 -
Gso12g0334 829 SMART arm_5 323 363 IPR000225 GO:0005515
Gso12g0334 829 SMART arm_5 741 781 IPR000225 GO:0005515
Gso12g0334 829 SMART arm_5 490 530 IPR000225 GO:0005515
Gso12g0334 829 SMART arm_5 405 448 IPR000225 GO:0005515
Gso12g0334 829 SMART arm_5 625 665 IPR000225 GO:0005515
Gso12g0334 829 SMART arm_5 697 737 IPR000225 GO:0005515
Gso12g0334 829 SMART arm_5 241 280 IPR000225 GO:0005515
Gso12g0334 829 SMART arm_5 364 404 IPR000225 GO:0005515
Gso12g0334 829 Gene3D - 492 677 IPR011989 -
Gso12g0334 829 Pfam Armadillo/beta-catenin-like repeat 365 404 IPR000225 GO:0005515
Gso12g0334 829 Pfam Armadillo/beta-catenin-like repeat 633 664 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0334 Gso-Chr12 2954464 2957932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0334 180 829 U-box Gene Family AT1G20780 28.551 1.11e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0334 K08332 - gmx:102659538 1513.43