Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0330 ATGAGAAGCTGTGTGTGCTACACGCTATTATTGTTTATTTTCTTCATATGGCTGCGCGTGGCAACGTGCTCTTCGTTCACTGACATGGAATCGCTTCTGAAGCTGAAGGACTCCATGAAAGGAGATAAAGCCAAAGACGACGCTCTCCATGACTGGAAGTTTTTCCCCTCGCTTTCTGCACACTGTTTCTTTTCAGGCGTAAAATGCGACCGAGAACTTCGAGTCGTTGCTATCAACGTCTCGTTTGTTCCTCTCTTCGGTCACCTTCCGCCGGAGATCGGACAATTGGACAAACTCGAGAACCTCACCGTCTCGCAGAACAACCTCACCGGCGTACTTCCCAAGGAGCTCGCCGCCCTCACTTCCCTCAAGCACCTCAACATCTCTCACAACGTCTTCTCCGGCCATTTCCCCGGCCAAATTATCCTTCCGATGACGAAACTGGAGGTCCTCGACGTCTACGACAACAACTTCACCGGACCGCTTCCCGTAGAGTTGGTGAAACTGGAGAAATTAAAATACCTGAAGCTCGACGGAAACTATTTCTCCGGCAGCATACCGGAGAGTTACTCGGAGTTTAAGAGCTTGGAGTTTTTAAGCTTAAGCACCAATAGCTTATCGGGGAAGATTCCCAAGAGTTTGTCGAAGTTGAAGACGCTGAGGTACCTAAAACTCGGATACAACAACGCTTACGAAGGTGGAATTCCACCGGAGTTTGGCAGCATGAAATCTCTGAGATACCTTGACCTCTCTAGCTGCAACCTCAGCGGCGAGATTCCACCGAGCCTTGCAAATCTGACAAACCTTGACACGTTGTTCCTGCAAATTAACAACCTCACCGGAACCATTCCGTCGGAGCTCTCCGCTATGGTGAGCCTCATGTCACTTGATCTCTCCATCAACGACCTCACCGGTGAGATACCGATGAGCTTCTCACAGCTTAGAAACCTCACTCTCATGAACTTCTTCCAAAACAATCTTCGCGGCTCAGTTCCGTCCTTCGTCGGCGAGCTTCCGAATCTGGAAACGCTGCAGCTCTGGGATAACAACTTCTCCTTCGTGCTACCTCCGAACCTTGGGCAAAACGGCAAGTTAAAGTTCTTCGACGTCATCAAGAATCACTTCACCGGGTTGATCCCTCGAGATTTGTGTAAGAGTGGGAGGTTACAAACGATCATGATCACAGATAACTTCTTCCGCGGTCCAATCCCTAACGAGATTGGTAACTGCAAGTCTCTCACCAAGATCCGAGCCTCCAATAACTACCTTAACGGCGTGGTTCCGTCAGGGATTTTCAAACTACCTTCTGTCACGATAATCGAGCTGGCCAATAACCGTTTTAACGGCGAACTGCCTCCTGAGATTTCCGGCGAATCCCTGGGGATTCTCACTCTTTCCAACAACTTATTCAGTGGGAAAATTCCCCCAGCGTTGAAGAACTTGAGGGCACTGCAGACTCTCTCACTTGACGCAAACGAGTTCGTTGGAGAAATACCGGGAGAGGTTTTTGACCTACCGATGCTGACTGTGGTCAACATAAGCGGCAACAATCTAACCGGACCAATCCCAACGACGTTGACTCGCTGCGTTTCACTCACCGCCGTGGACCTCAGCCGGAACATGCTTGAAGGGAAGATTCCGAAGGGAATCAAAAACCTCACGGACTTGAGCATTTTCAATGTGTCGATAAACCAAATTTCAGGGCCAGTCCCTGAGGAGATTCGCTTCATGTTGAGTCTCACCACATTGGATCTATCCAACAACAATTTCATCGGCAAGGTCCCAACCGGGGGTCAGTTCGCGGTCTTCAGCGAGAAATCCTTTGCAGGGAACCCCAACCTCTGTACCTCCCACTCTTGCCCGAATTCCTCGTTGTACCCTGACGACGCCTTGAAGAAGAGGCGCGGCCCTTGGAGTTTGAAATCCACGAGGGTGATAGTCATCGTGATTGCACTGGGCACAGCCGCGCTGCTGGTGGCGGTGACGGTGTACATGATGAGGAGGAGGAAGATGAACCTTGCGAAGACGTGGAAGCTGACGGCGTTCCAGCGGCTGAACTTCAAAGCCGAGGACGTGGTGGAGTGTCTGAAGGAGGAGAACATAATAGGAAAAGGAGGGGCAGGGATCGTGTACCGCGGGTCCATGCCAAACGGAACAGACGTGGCGATAAAGCGGTTGGTTGGGGCGGGGAGTGGAAGGAACGATTACGGATTCAAAGCGGAGATAGAAACGCTGGGGAAGATAAGGCACAGGAACATAATGAGGCTTTTAGGTTACGTGTCGAACAAGGAGACGAACTTGCTGCTGTATGAGTACATGCCAAATGGGAGCTTAGGGGAATGGCTGCATGGTGCCAAAGGAGGGCACTTGAAGTGGGAAATGAGGTACAAGATTGCGGTGGAAGCTGCTAAGGGACTGTGCTATTTGCACCATGATTGTTCCCCTCTTATCATTCACAGGGATGTCAAGTCTAATAATATATTGCTGGATGGGGACTTGGAGGCCCATGTTGCTGATTTTGGCCTTGCCAAGTTCTTGTACGACCCTGGCGCCTCTCAGTCCATGTCCTCCATTGCTGGCTCCTACGGCTACATTGCTCCAGAGTATGCATACACTTTGAAAGTGGACGAGAAAAGTGATGTGTACAGCTTTGGCGTTGTGCTGCTGGAGCTGATAATAGGGAGGAAGCCAGTGGGAGAGTTTGGAGACGGGGTGGACATCGTTGGATGGGTCAACAAAACGAGATTGGAGCTTGCTCAGCCGTCGGATGCAGCGTTGGTGTTGGCAGTGGTGGACCCAAGGTTGAGTGGGTATCCATTGACAAGTGTCATTTACATGTTCAACATAGCTATGATGTGTGTTAAAGAAATGGGGCCCGCTAGGCCTACCATGAGGGAAGTCGTTCATATGCTCTCAGAGCCTCCTCACTCTGCTACTCACACTCACAACCTAATTAATCTCTAG 2964 0.5051 MRSCVCYTLLLFIFFIWLRVATCSSFTDMESLLKLKDSMKGDKAKDDALHDWKFFPSLSAHCFFSGVKCDRELRVVAINVSFVPLFGHLPPEIGQLDKLENLTVSQNNLTGVLPKELAALTSLKHLNISHNVFSGHFPGQIILPMTKLEVLDVYDNNFTGPLPVELVKLEKLKYLKLDGNYFSGSIPESYSEFKSLEFLSLSTNSLSGKIPKSLSKLKTLRYLKLGYNNAYEGGIPPEFGSMKSLRYLDLSSCNLSGEIPPSLANLTNLDTLFLQINNLTGTIPSELSAMVSLMSLDLSINDLTGEIPMSFSQLRNLTLMNFFQNNLRGSVPSFVGELPNLETLQLWDNNFSFVLPPNLGQNGKLKFFDVIKNHFTGLIPRDLCKSGRLQTIMITDNFFRGPIPNEIGNCKSLTKIRASNNYLNGVVPSGIFKLPSVTIIELANNRFNGELPPEISGESLGILTLSNNLFSGKIPPALKNLRALQTLSLDANEFVGEIPGEVFDLPMLTVVNISGNNLTGPIPTTLTRCVSLTAVDLSRNMLEGKIPKGIKNLTDLSIFNVSINQISGPVPEEIRFMLSLTTLDLSNNNFIGKVPTGGQFAVFSEKSFAGNPNLCTSHSCPNSSLYPDDALKKRRGPWSLKSTRVIVIVIALGTAALLVAVTVYMMRRRKMNLAKTWKLTAFQRLNFKAEDVVECLKEENIIGKGGAGIVYRGSMPNGTDVAIKRLVGAGSGRNDYGFKAEIETLGKIRHRNIMRLLGYVSNKETNLLLYEYMPNGSLGEWLHGAKGGHLKWEMRYKIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLDGDLEAHVADFGLAKFLYDPGASQSMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIIGRKPVGEFGDGVDIVGWVNKTRLELAQPSDAALVLAVVDPRLSGYPLTSVIYMFNIAMMCVKEMGPARPTMREVVHMLSEPPHSATHTHNLINL* 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0330 987 Pfam Protein tyrosine and serine/threonine kinase 697 969 IPR001245 GO:0004672|GO:0006468
Gso12g0330 987 Gene3D Ribonuclease Inhibitor 143 230 IPR032675 -
Gso12g0330 987 SMART LRR_typ_2 338 362 IPR003591 -
Gso12g0330 987 SMART LRR_typ_2 193 217 IPR003591 -
Gso12g0330 987 SMART LRR_typ_2 96 119 IPR003591 -
Gso12g0330 987 SMART LRR_typ_2 120 144 IPR003591 -
Gso12g0330 987 SMART LRR_typ_2 145 169 IPR003591 -
Gso12g0330 987 SMART LRR_typ_2 266 290 IPR003591 -
Gso12g0330 987 SMART LRR_typ_2 481 505 IPR003591 -
Gso12g0330 987 SMART LRR_typ_2 434 458 IPR003591 -
Gso12g0330 987 SMART LRR_typ_2 577 610 IPR003591 -
Gso12g0330 987 SMART LRR_typ_2 242 265 IPR003591 -
Gso12g0330 987 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 5 978 - -
Gso12g0330 987 ProSiteProfiles Protein kinase domain profile. 696 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0330 987 ProSitePatterns Serine/Threonine protein kinases active-site signature. 817 829 IPR008271 GO:0004672|GO:0006468
Gso12g0330 987 SMART serkin_6 696 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g0330 987 Pfam Leucine rich repeat 484 542 IPR001611 GO:0005515
Gso12g0330 987 Pfam Leucine Rich repeat 579 592 IPR001611 GO:0005515
Gso12g0330 987 Pfam Leucine Rich Repeat 244 266 IPR001611 GO:0005515
Gso12g0330 987 SUPERFAMILY RNI-like 78 400 - -
Gso12g0330 987 PANTHER UNNAMED PRODUCT 5 978 - -
Gso12g0330 987 Gene3D Ribonuclease Inhibitor 27 142 IPR032675 -
Gso12g0330 987 SUPERFAMILY L domain-like 379 617 - -
Gso12g0330 987 Gene3D Ribonuclease Inhibitor 231 331 IPR032675 -
Gso12g0330 987 Pfam Leucine rich repeat N-terminal domain 28 70 IPR013210 -
Gso12g0330 987 Gene3D Phosphorylase Kinase; domain 1 660 772 - -
Gso12g0330 987 Gene3D Ribonuclease Inhibitor 332 625 IPR032675 -
Gso12g0330 987 Gene3D Transferase(Phosphotransferase) domain 1 773 984 - -
Gso12g0330 987 SUPERFAMILY Protein kinase-like (PK-like) 687 971 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0330 Gso-Chr12 2932515 2936327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0330 23 980 Receptor kinase-like Gene Family AT1G75820 62.643 0.0 1216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso12g0330 PK_Tyr_Ser-Thr 2.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0330 K00924 - gmx:732625 1917.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0330 12 2932515 2936327 Gso11g0980 11 8755358 8757673 GST