LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso12g0323	ATGGCTTCCGATTCTTCTCCCCTGAATTTCAACAACGGACCTTCATCCCCCGACGACTCCCTTTCCAGCCCTATCGGCAACACCTTCTCCTCGCCGGCAAGTAGACGCCGGCGCCGCTCATCCACCCCCTCCGCATTCGCCACCCCGTCGGAGCGCCGCTCCCGATTCGCCTCCTCCGATGCCACCCCAACCGCGCCGCGCTCCCGCCAGAGAGGTGGCAGTGGAGGCGGCGGAGGGCACGTTCCCGCCACTCCGACCTCCACCACCGACGACGTGCCGGTCTCTTCGGATGGCGGCGACGGCTTCGACATGGACGATGCCAGGCCCACCTTCGTGTGGGGCACCAACATAAGCGTGGAAGACGTGAACGACGCGATTAAAAGGTTCGTGAGGAACTTCAGAGAAGCGTCTTCGTCGCAGGGTGGTGACGATGATGACGGGTTGCACTTGCACACCGAAGGGAAGTATGAGAAACTGATCAGACAGGTTATTGACGTTGAAGGAGATTCTCTTGATGTTGATGCGCGTGATGTGTTTGATCATGACCCTGATCTGTACACTAAGATGGTTAGGTACCCTCTTGAGGTGCTTGCCATCTTTGATTTGGTCTTGATGAACATGGTTAGCGAATTGAAGCCTATGTTCGAGAAGCACATTCAGACCCGTATTTTCAATCTCAGAACCTCAACCTCTATGAGAAATTTGAACCCATCTGATATTGAGAGGATGGTATCATTGAAGGGAATGGTTATAAGAAGCAGCTCAATCATTCCAGAGATTAGGGAAGCTATATTTAGGTGTCTTGTGTGTGGATTCTGCTCTGAGCCAGTTCCTGTGGAGAGAGGGCGAATAACTGAACCCACTATATGTTTGAGGGAAGAGTGTCAATCCAGAAACTCCATGGCACTTGTTCACAACCGATGCAGGTTTGCTGACAAGCAAATTGTGAGGGTCCAGGAGACACCTGACGAGATTCCTGAAGGAGGAACACCTCACACAGTTAGCTTGCTGATGCATGACAAGTTGGTGGATAATGCAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATTTATAGGGCTATGAGTGTCAGGGTTGGACCAACACAGAGAACTGTTAAGTCATTGTTCAAGACATATATTGATTGTCTTCACATAAAGAAGACTGATAAGTCCAGGATGTTTGTAGAGGATGTTATGGATGTTGATGGTCAAGATAGAAATGCAGAAGTTCTCTTTGATGAAGAAAAGGTGGCTCAACTGAAGGAGCTCTCAAAACGGCCTGATATATATGAAATACTGACAAATTCATTGGCTCCAAACATCTGGGAGCTAGATGATGTGAAAAAAGGTCTTCTTTGTCAGCTTTTTGGTGGCAATGCTTTGAAGTTAGCTTCTGGTGCTAACTTTCGTGGCGATATAAATATTCTTCTCGTTGGTGATCCTGGGACAAGCAAGTCCCAGTTACTTCAATACATACACAAACTATCTCCACGTGGCATTTACACCAGTGGAAGGGGAAGTTCAGCCGTTGGATTGACTGCTTATGTGACCAAGGACCCCGAAACAGGAGAAACTGTTTTAGAGAGTGGTGCCCTTGTTTTGAGTGACCGAGGTATATGTTGTATTGATGAATTTGACAAAATGTCTGACAATGCAAGGAGCATGTTACATGAGGTGATGGAACAACAAACCGTTTCAATAGCAAAGGCAGGTATTATTGCTTCCCTCAATGCTAGGACTTCGGTGTTGGCTTGTGCAAATCCAAGTGGGTCAAGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACTCTTTTGTCCAGATTTGATTTAATCTACTTGATGCTTGACAAGGCTCATGAACAGACTGATAGGCGCCTTGCCAAACATATTGTGTCCCTACACTTTGAGAATCCCGAGAACGTGGAGCAGGATGTGTTGGACATTTCTACATTAACCGATTATGTTAGCTATGCCCGAAGGCACATACACCCACAGCTTTCTGATGAAGCTGCTGAAGAATTGACTAGAGGTTACGTAGAAATAAGAAAAAGAGGAAATTTTCCTGGGAGTAGCAAAAAGGTGATAACAGCAACACCGAGGCAGATTGAGAGTCTGATACGCCTAAGTGAAGCATTGGCTCGGATGCGCTTCTCAGAATGGGTCGAAAAACATGATGTAATGGAGGCTTTTCGGCTTTTGGAAGTTGCGATGCAGCAGTCTGCAACGGATCATTCTACTGGAACTATTGACATGGATCTTATTACTACTGGAGTTTCGGCAAGCGAAAGGATGAGACGAGAAAGTTTGCAACAAGCTACTCGTAACATAATCATGGAGAAAATGCAGATTGGGGGACAATCTATGCGGTTATTGGAGTTATTGGAAGAATTGAAGAAACAGGATACTGGTAGCGATGTTCATCTTAATGATCTAAGGAATGCAATTGCTACTCTCGCTGCAGAAGGATTTGTTACCATGCACGGTGACAGTGTAAAAAGATCTTGA	2520	0.4667	MASDSSPLNFNNGPSSPDDSLSSPIGNTFSSPASRRRRRSSTPSAFATPSERRSRFASSDATPTAPRSRQRGGSGGGGGHVPATPTSTTDDVPVSSDGGDGFDMDDARPTFVWGTNISVEDVNDAIKRFVRNFREASSSQGGDDDDGLHLHTEGKYEKLIRQVIDVEGDSLDVDARDVFDHDPDLYTKMVRYPLEVLAIFDLVLMNMVSELKPMFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSLKGMVIRSSSIIPEIREAIFRCLVCGFCSEPVPVERGRITEPTICLREECQSRNSMALVHNRCRFADKQIVRVQETPDEIPEGGTPHTVSLLMHDKLVDNAKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMFVEDVMDVDGQDRNAEVLFDEEKVAQLKELSKRPDIYEILTNSLAPNIWELDDVKKGLLCQLFGGNALKLASGANFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLMLDKAHEQTDRRLAKHIVSLHFENPENVEQDVLDISTLTDYVSYARRHIHPQLSDEAAEELTRGYVEIRKRGNFPGSSKKVITATPRQIESLIRLSEALARMRFSEWVEKHDVMEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLQQATRNIIMEKMQIGGQSMRLLELLEELKKQDTGSDVHLNDLRNAIATLAAEGFVTMHGDSVKRS*	840

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso12g0323	839	PRINTS	Mini-chromosome maintenance (MCM) protein 4 signature	254	267	IPR008047	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Gso12g0323	839	PRINTS	Mini-chromosome maintenance (MCM) protein 4 signature	305	317	IPR008047	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Gso12g0323	839	PRINTS	Mini-chromosome maintenance (MCM) protein 4 signature	445	456	IPR008047	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Gso12g0323	839	PRINTS	Mini-chromosome maintenance (MCM) protein 4 signature	591	608	IPR008047	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Gso12g0323	839	PRINTS	Mini-chromosome maintenance (MCM) protein 4 signature	743	752	IPR008047	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Gso12g0323	839	Pfam	MCM AAA-lid domain	655	741	IPR041562	-
Gso12g0323	839	PANTHER	DNA REPLICATION LICENSING FACTOR MCM4	81	838	IPR008047	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Gso12g0323	839	Gene3D	-	259	311	-	-
Gso12g0323	839	MobiDBLite	consensus disorder prediction	1	69	-	-
Gso12g0323	839	ProSitePatterns	MCM family signature.	538	546	IPR018525	GO:0003677\|GO:0005524\|GO:0006260

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso12g0323	Gso-Chr12	2886507	2892201	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso12g0323	1	838	Core DNA Replication Machinery Family	AT2G16440	74.941	0.0	1261

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso12g0323	K02212		-	gmx:100805788	1576.61

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso12g0323	12	2886507	2892201	Gso11g0971	11	8693959	8699267	GST

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