Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0323 ATGGCTTCCGATTCTTCTCCCCTGAATTTCAACAACGGACCTTCATCCCCCGACGACTCCCTTTCCAGCCCTATCGGCAACACCTTCTCCTCGCCGGCAAGTAGACGCCGGCGCCGCTCATCCACCCCCTCCGCATTCGCCACCCCGTCGGAGCGCCGCTCCCGATTCGCCTCCTCCGATGCCACCCCAACCGCGCCGCGCTCCCGCCAGAGAGGTGGCAGTGGAGGCGGCGGAGGGCACGTTCCCGCCACTCCGACCTCCACCACCGACGACGTGCCGGTCTCTTCGGATGGCGGCGACGGCTTCGACATGGACGATGCCAGGCCCACCTTCGTGTGGGGCACCAACATAAGCGTGGAAGACGTGAACGACGCGATTAAAAGGTTCGTGAGGAACTTCAGAGAAGCGTCTTCGTCGCAGGGTGGTGACGATGATGACGGGTTGCACTTGCACACCGAAGGGAAGTATGAGAAACTGATCAGACAGGTTATTGACGTTGAAGGAGATTCTCTTGATGTTGATGCGCGTGATGTGTTTGATCATGACCCTGATCTGTACACTAAGATGGTTAGGTACCCTCTTGAGGTGCTTGCCATCTTTGATTTGGTCTTGATGAACATGGTTAGCGAATTGAAGCCTATGTTCGAGAAGCACATTCAGACCCGTATTTTCAATCTCAGAACCTCAACCTCTATGAGAAATTTGAACCCATCTGATATTGAGAGGATGGTATCATTGAAGGGAATGGTTATAAGAAGCAGCTCAATCATTCCAGAGATTAGGGAAGCTATATTTAGGTGTCTTGTGTGTGGATTCTGCTCTGAGCCAGTTCCTGTGGAGAGAGGGCGAATAACTGAACCCACTATATGTTTGAGGGAAGAGTGTCAATCCAGAAACTCCATGGCACTTGTTCACAACCGATGCAGGTTTGCTGACAAGCAAATTGTGAGGGTCCAGGAGACACCTGACGAGATTCCTGAAGGAGGAACACCTCACACAGTTAGCTTGCTGATGCATGACAAGTTGGTGGATAATGCAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATTTATAGGGCTATGAGTGTCAGGGTTGGACCAACACAGAGAACTGTTAAGTCATTGTTCAAGACATATATTGATTGTCTTCACATAAAGAAGACTGATAAGTCCAGGATGTTTGTAGAGGATGTTATGGATGTTGATGGTCAAGATAGAAATGCAGAAGTTCTCTTTGATGAAGAAAAGGTGGCTCAACTGAAGGAGCTCTCAAAACGGCCTGATATATATGAAATACTGACAAATTCATTGGCTCCAAACATCTGGGAGCTAGATGATGTGAAAAAAGGTCTTCTTTGTCAGCTTTTTGGTGGCAATGCTTTGAAGTTAGCTTCTGGTGCTAACTTTCGTGGCGATATAAATATTCTTCTCGTTGGTGATCCTGGGACAAGCAAGTCCCAGTTACTTCAATACATACACAAACTATCTCCACGTGGCATTTACACCAGTGGAAGGGGAAGTTCAGCCGTTGGATTGACTGCTTATGTGACCAAGGACCCCGAAACAGGAGAAACTGTTTTAGAGAGTGGTGCCCTTGTTTTGAGTGACCGAGGTATATGTTGTATTGATGAATTTGACAAAATGTCTGACAATGCAAGGAGCATGTTACATGAGGTGATGGAACAACAAACCGTTTCAATAGCAAAGGCAGGTATTATTGCTTCCCTCAATGCTAGGACTTCGGTGTTGGCTTGTGCAAATCCAAGTGGGTCAAGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACTCTTTTGTCCAGATTTGATTTAATCTACTTGATGCTTGACAAGGCTCATGAACAGACTGATAGGCGCCTTGCCAAACATATTGTGTCCCTACACTTTGAGAATCCCGAGAACGTGGAGCAGGATGTGTTGGACATTTCTACATTAACCGATTATGTTAGCTATGCCCGAAGGCACATACACCCACAGCTTTCTGATGAAGCTGCTGAAGAATTGACTAGAGGTTACGTAGAAATAAGAAAAAGAGGAAATTTTCCTGGGAGTAGCAAAAAGGTGATAACAGCAACACCGAGGCAGATTGAGAGTCTGATACGCCTAAGTGAAGCATTGGCTCGGATGCGCTTCTCAGAATGGGTCGAAAAACATGATGTAATGGAGGCTTTTCGGCTTTTGGAAGTTGCGATGCAGCAGTCTGCAACGGATCATTCTACTGGAACTATTGACATGGATCTTATTACTACTGGAGTTTCGGCAAGCGAAAGGATGAGACGAGAAAGTTTGCAACAAGCTACTCGTAACATAATCATGGAGAAAATGCAGATTGGGGGACAATCTATGCGGTTATTGGAGTTATTGGAAGAATTGAAGAAACAGGATACTGGTAGCGATGTTCATCTTAATGATCTAAGGAATGCAATTGCTACTCTCGCTGCAGAAGGATTTGTTACCATGCACGGTGACAGTGTAAAAAGATCTTGA 2520 0.4667 MASDSSPLNFNNGPSSPDDSLSSPIGNTFSSPASRRRRRSSTPSAFATPSERRSRFASSDATPTAPRSRQRGGSGGGGGHVPATPTSTTDDVPVSSDGGDGFDMDDARPTFVWGTNISVEDVNDAIKRFVRNFREASSSQGGDDDDGLHLHTEGKYEKLIRQVIDVEGDSLDVDARDVFDHDPDLYTKMVRYPLEVLAIFDLVLMNMVSELKPMFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSLKGMVIRSSSIIPEIREAIFRCLVCGFCSEPVPVERGRITEPTICLREECQSRNSMALVHNRCRFADKQIVRVQETPDEIPEGGTPHTVSLLMHDKLVDNAKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMFVEDVMDVDGQDRNAEVLFDEEKVAQLKELSKRPDIYEILTNSLAPNIWELDDVKKGLLCQLFGGNALKLASGANFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLMLDKAHEQTDRRLAKHIVSLHFENPENVEQDVLDISTLTDYVSYARRHIHPQLSDEAAEELTRGYVEIRKRGNFPGSSKKVITATPRQIESLIRLSEALARMRFSEWVEKHDVMEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLQQATRNIIMEKMQIGGQSMRLLELLEELKKQDTGSDVHLNDLRNAIATLAAEGFVTMHGDSVKRS* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0323 839 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 254 267 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Gso12g0323 839 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 305 317 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Gso12g0323 839 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 445 456 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Gso12g0323 839 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 591 608 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Gso12g0323 839 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 743 752 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Gso12g0323 839 Pfam MCM AAA-lid domain 655 741 IPR041562 -
Gso12g0323 839 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 81 838 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Gso12g0323 839 Gene3D - 259 311 - -
Gso12g0323 839 MobiDBLite consensus disorder prediction 1 69 - -
Gso12g0323 839 ProSitePatterns MCM family signature. 538 546 IPR018525 GO:0003677|GO:0005524|GO:0006260
Gso12g0323 839 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 81 838 IPR031327 GO:0003677|GO:0005524|GO:0032508
Gso12g0323 839 Gene3D - 413 747 IPR027417 -
Gso12g0323 839 CDD MCM4 432 741 - -
Gso12g0323 839 Pfam MCM P-loop domain 417 639 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso12g0323 839 ProSiteProfiles MCM family domain profile. 429 635 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso12g0323 839 Pfam MCM N-terminal domain 125 228 IPR027925 -
Gso12g0323 839 SUPERFAMILY Nucleic acid-binding proteins 151 382 IPR012340 -
Gso12g0323 839 Pfam MCM OB domain 232 361 IPR033762 -
Gso12g0323 839 Gene3D - 748 835 IPR036388 -
Gso12g0323 839 Gene3D - 232 371 IPR012340 -
Gso12g0323 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 470 485 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso12g0323 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 530 544 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso12g0323 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 558 571 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso12g0323 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 582 594 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso12g0323 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 609 617 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso12g0323 839 SMART mcm 228 743 IPR031327 GO:0003677|GO:0005524|GO:0032508
Gso12g0323 839 MobiDBLite consensus disorder prediction 1 103 - -
Gso12g0323 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 440 755 IPR027417 -
Gso12g0323 839 Gene3D - 116 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0323 Gso-Chr12 2886507 2892201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0323 1 838 Core DNA Replication Machinery Family AT2G16440 74.941 0.0 1261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0323 K02212 - gmx:100805788 1576.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0323 12 2886507 2892201 Gso11g0971 11 8693959 8699267 GST