Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0313 ATGCTGACTTATAAGAAACCAAAGAGAGATAAAGATAACACAACACCAATACCTCAACTCAAACGCCTGTTTCGCCTAACCAAAGGAAGCTCCACTGCGGTTTCCGTTTCCTCTCTGCCTTCACCACTCTCTTTTTTTTCTCAACAGGAACAAAGAAAAATGGAAGTTGCGGCAGCGAAAGCCCTGAAACCAAGCCTTCGGACAGAGTTCATTTTCCCTCAAGCAATTTACGACGAGATTTTGTGTTTTAACGCCAACAACGTTGTTGCCGGCGAAGATTTCTCCGTGGACGACCTACTCGACTTCTCCAACGGCGAATTCCAAGTTGGGAAAGATTTCGATGACTACGAGGAAGACGAAGACGAAGAAAAAGGCAGCACCTCCGGTTCCTTGCAGTCGCAGGACAGAACCGAAGACGACAGCAACTCTAATTCCACCGCCGGAGGCGGCGGAGACTCCGTTTTCGCCGGCGAGTTGTCAGTTCCGGCGGATGACGTGGCAGACTTGGAATGGGTTTCTCACTTTGTGGACGATTCTCTCCCGGAGTTATCTCTATTGTACCCAGTCCGTTGTTCCGAGCAAACAAGGGTATGTACCGAACCGGAACCCAGACCGGGCTCGGTCCAAACCATTCCAGCAGTTCCAAGAAAGCCGAGAACCGGAAAGACTAGAAAGCCCAACGCTCGTGTCTGGTCCTCGATGTCGTCTTTGTGTTCTTCGGTGACGGCCAAGAAACAGAAGAAAAAGGTCGAGGCCCAAAACGGTGGGGCCCAGTCTCTGCGACGGTGCAGCCACTGCCAGGTGCAAAAAACGCCACAGTGGAGAACCGGCCCACTAGGGCCCAAAACACTTTGCAACGCTTGTGGAGTTCGGTTCAAGTCCGGTCGACTTTTTCCAGAGTATAGACCAGCCTGTAGCCCAACTTTTTCTGACGATATTCACTCCAACAGCCATCGTAAAGTGTTGGAGATGAGACGAAAAAAGGAGATAGTTGAATCGGACCGGATTCAATTGATCCCAAGTTGTTAA 1029 0.5034 MLTYKKPKRDKDNTTPIPQLKRLFRLTKGSSTAVSVSSLPSPLSFFSQQEQRKMEVAAAKALKPSLRTEFIFPQAIYDEILCFNANNVVAGEDFSVDDLLDFSNGEFQVGKDFDDYEEDEDEEKGSTSGSLQSQDRTEDDSNSNSTAGGGGDSVFAGELSVPADDVADLEWVSHFVDDSLPELSLLYPVRCSEQTRVCTEPEPRPGSVQTIPAVPRKPRTGKTRKPNARVWSSMSSLCSSVTAKKQKKKVEAQNGGAQSLRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSDDIHSNSHRKVLEMRRKKEIVESDRIQLIPSC* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0313 342 ProSitePatterns GATA-type zinc finger domain. 263 288 IPR000679 GO:0006355|GO:0043565
Gso12g0313 342 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 259 318 - -
Gso12g0313 342 SMART GATA_3 257 311 IPR000679 GO:0006355|GO:0043565
Gso12g0313 342 ProSiteProfiles GATA-type zinc finger domain profile. 257 293 IPR000679 GO:0006355|GO:0043565
Gso12g0313 342 CDD ZnF_GATA 262 319 IPR000679 GO:0006355|GO:0043565
Gso12g0313 342 MobiDBLite consensus disorder prediction 127 150 - -
Gso12g0313 342 Gene3D - 253 335 IPR013088 GO:0006355|GO:0008270
Gso12g0313 342 MobiDBLite consensus disorder prediction 198 229 - -
Gso12g0313 342 PANTHER GATA TRANSCRIPTION FACTOR 54 241 - -
Gso12g0313 342 PANTHER GATA TRANSCRIPTION FACTOR 241 341 - -
Gso12g0313 342 MobiDBLite consensus disorder prediction 116 157 - -
Gso12g0313 342 PANTHER GATA TRANSCRIPTION FACTOR 241 341 - -
Gso12g0313 342 PANTHER GATA TRANSCRIPTION FACTOR 54 241 - -
Gso12g0313 342 Pfam GATA zinc finger 263 296 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0313 Gso-Chr12 2776461 2778400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0313 93 328 C2C2-Gata Transcription Factor Family AT4G36240 47.600 1.54e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso12g0313 GATA 4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0313 - - gmx:100776188 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0313 12 2776461 2778400 Gso11g0956 11 8555281 8557191 GST